STRINGSTRING
Xaut_2388 Xaut_2388 Xaut_2555 Xaut_2555 Xaut_3106 Xaut_3106 Xaut_3413 Xaut_3413 Xaut_4179 Xaut_4179 Xaut_1411 Xaut_1411 Xaut_1344 Xaut_1344 Xaut_0917 Xaut_0917 Xaut_0915 Xaut_0915 Xaut_0906 Xaut_0906
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_2388KEGG: bbt:BBta_1931 putative exported protein of unknown function. (310 aa)
Xaut_2555PFAM: phosphoesterase PA-phosphatase related; KEGG: rsh:Rsph17029_1755 phosphoesterase, PA-phosphatase related. (271 aa)
Xaut_3106PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_1202 thioesterase superfamily. (156 aa)
Xaut_3413KEGG: rle:RL1920 hypothetical protein. (328 aa)
Xaut_4179KEGG: rpc:RPC_0632 protein involved in MetA-pathway of phenol degradation-like. (278 aa)
Xaut_1411PFAM: thioesterase superfamily protein; KEGG: mag:amb0828 predicted thioesterase. (148 aa)
Xaut_1344KEGG: pol:Bpro_4520 conserved hypothetical protein; putative signal peptide. (294 aa)
Xaut_0917PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nca:Noca_0618 NADH:flavin oxidoreductase/NADH oxidase. (734 aa)
Xaut_0915PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pde:Pden_0201 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (686 aa)
Xaut_0906PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pna:Pnap_2135 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family. (704 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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