STRINGSTRING
Xaut_0032 Xaut_0032 Xaut_1365 Xaut_1365 Xaut_1787 Xaut_1787 mch mch Xaut_1793 Xaut_1793 ffsA ffsA Xaut_1795 Xaut_1795 Xaut_1796 Xaut_1796 Xaut_1975 Xaut_1975 Xaut_4239 Xaut_4239
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_0032PFAM: Formaldehyde-activating enzyme (Fae); KEGG: bxe:Bxe_B2436 formaldehyde-activating enzyme. (169 aa)
Xaut_1365PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mca:MCA2866 formaldehyde-activating enzyme. (191 aa)
Xaut_1787PFAM: Methylene-tetrahydromethanopterin dehydrogenase; KEGG: mfa:Mfla_1660 methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase, putative. (297 aa)
mchMethenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family. (329 aa)
Xaut_1793PFAM: glutamate synthase alpha subunit domain protein; KEGG: mpt:Mpe_A2626 formylmethanofuran dehydrogenase. (267 aa)
ffsAFormylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family. (313 aa)
Xaut_1795PFAM: Amidohydrolase 3; KEGG: mca:MCA2859 formylmethanofurane dehydrogenase, A subunit, putative. (549 aa)
Xaut_1796KEGG: mca:MCA2860 formylmethanofuran dehydrogenase. (440 aa)
Xaut_1975PFAM: protein of unknown function DUF459; KEGG: mlo:mlr3028 hypothetical protein. (428 aa)
Xaut_4239PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: cvi:CV1639 hypothetical protein. (134 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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