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Xaut_0002 Xaut_0002 mutS mutS xerC xerC Xaut_0194 Xaut_0194 Xaut_0215 Xaut_0215 Xaut_0220 Xaut_0220 Xaut_0248 Xaut_0248 Xaut_0249 Xaut_0249 Xaut_0250 Xaut_0250 Xaut_0268 Xaut_0268 Xaut_0272 Xaut_0272 Xaut_0277 Xaut_0277 Xaut_0436 Xaut_0436 Xaut_0442 Xaut_0442 Xaut_0499 Xaut_0499 Xaut_0536 Xaut_0536 Xaut_0544 Xaut_0544 Xaut_0547 Xaut_0547 Xaut_0549 Xaut_0549 Xaut_0557 Xaut_0557 Xaut_0587 Xaut_0587 Xaut_0672 Xaut_0672 Xaut_0680 Xaut_0680 Xaut_0703 Xaut_0703 Xaut_0753 Xaut_0753 Xaut_0776 Xaut_0776 Xaut_0781 Xaut_0781 Xaut_0782 Xaut_0782 Xaut_0785 Xaut_0785 Xaut_0786 Xaut_0786 dnaE2 dnaE2 Xaut_0809 Xaut_0809 Xaut_0821 Xaut_0821 Xaut_1065 Xaut_1065 Xaut_1087 Xaut_1087 Xaut_1090 Xaut_1090 Xaut_1093 Xaut_1093 Xaut_1096 Xaut_1096 Xaut_1098 Xaut_1098 Xaut_1099 Xaut_1099 Xaut_1172 Xaut_1172 Xaut_1173 Xaut_1173 Xaut_1368 Xaut_1368 xseA xseA Xaut_1417 Xaut_1417 Xaut_1426 Xaut_1426 Xaut_1448 Xaut_1448 Xaut_1459 Xaut_1459 Xaut_1470 Xaut_1470 Xaut_1609 Xaut_1609 Xaut_1610 Xaut_1610 nth nth xerC-2 xerC-2 ligA ligA dnaQ dnaQ gyrB gyrB priA priA dnaX dnaX Xaut_2245 Xaut_2245 Xaut_2252 Xaut_2252 Xaut_2285 Xaut_2285 uvrC uvrC Xaut_2373 Xaut_2373 polA polA Xaut_2385 Xaut_2385 radA radA Xaut_2404 Xaut_2404 Xaut_2426 Xaut_2426 Xaut_2564 Xaut_2564 Xaut_2653 Xaut_2653 Xaut_2657 Xaut_2657 Xaut_2677 Xaut_2677 Xaut_2678 Xaut_2678 Xaut_2709 Xaut_2709 uvrB uvrB Xaut_2851 Xaut_2851 Xaut_2874 Xaut_2874 Xaut_2962 Xaut_2962 Xaut_2981 Xaut_2981 Xaut_2985 Xaut_2985 Xaut_2986 Xaut_2986 Xaut_2988 Xaut_2988 Xaut_2990 Xaut_2990 Xaut_3008 Xaut_3008 Xaut_3039 Xaut_3039 Xaut_3048 Xaut_3048 mutL mutL ruvC ruvC ruvA ruvA ruvB ruvB Xaut_3300 Xaut_3300 mutM mutM Xaut_3326 Xaut_3326 dnaE2-2 dnaE2-2 Xaut_3469 Xaut_3469 Xaut_3471 Xaut_3471 Xaut_3599 Xaut_3599 Xaut_3602 Xaut_3602 Xaut_3618 Xaut_3618 Xaut_3637 Xaut_3637 Xaut_3699 Xaut_3699 Xaut_3734 Xaut_3734 Xaut_3735 Xaut_3735 Xaut_3835 Xaut_3835 Xaut_3841 Xaut_3841 dinB dinB parC parC topA topA Xaut_4003 Xaut_4003 Xaut_4009 Xaut_4009 recA recA Xaut_4240 Xaut_4240 Xaut_4284 Xaut_4284 Xaut_4306 Xaut_4306 uvrA uvrA gyrA gyrA Xaut_4326 Xaut_4326 Xaut_4330 Xaut_4330 Xaut_4365 Xaut_4365 Xaut_4415 Xaut_4415 Xaut_4572 Xaut_4572 Xaut_4587 Xaut_4587 Xaut_4596 Xaut_4596 Xaut_4676 Xaut_4676 Xaut_4689 Xaut_4689 Xaut_4690 Xaut_4690 xseB xseB parE parE
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Xaut_0002DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (373 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (921 aa)
xerCIntegrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (342 aa)
Xaut_0194TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bja:blr0618 exodeoxyribonuclease III. (290 aa)
Xaut_0215PFAM: integrase family protein; KEGG: rsp:RSP_2361 putative integrase/resolvase recombinase protein phage-related integrase; Belongs to the 'phage' integrase family. (550 aa)
Xaut_0220PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL110144 putative transposon/insertion element protein. (88 aa)
Xaut_0248PFAM: Resolvase domain; KEGG: mes:Meso_3805 resolvase-like. (524 aa)
Xaut_0249KEGG: nwi:Nwi_2412 ISBm1, transposase orfA. (132 aa)
Xaut_0250PFAM: transposase IS4 family protein; KEGG: nwi:Nwi_1095 transposase, IS4. (142 aa)
Xaut_0268PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_4139 transposase IS116/IS110/IS902. (350 aa)
Xaut_0272TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: rpc:RPC_0149 MobA/MobL protein. (976 aa)
Xaut_0277PFAM: Resolvase domain; Recombinase; KEGG: bbt:BBta_0430 putative resolvase. (551 aa)
Xaut_0436PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tvo:TVN1476 adenine specific DNA methylase (Mod-related). (696 aa)
Xaut_0442TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: bbt:BBta_6372 putative conjugal transfer protein, TraA. (985 aa)
Xaut_0499PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mlo:mll9195 transposase. (370 aa)
Xaut_0536PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: art:Arth_0466 resolvase. (203 aa)
Xaut_0544PFAM: Relaxase/mobilization nuclease family protein; KEGG: nha:Nham_0596 hypothetical protein. (562 aa)
Xaut_0547PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tbd:Tbd_1491 adenine specific DNA-methyltransferase. (752 aa)
Xaut_0549PFAM: type III restriction protein res subunit; KEGG: deb:DehaBAV1_1044 type III restriction enzyme, res subunit. (890 aa)
Xaut_0557PFAM: transposase IS4 family protein; KEGG: swi:Swit_4905 transposase, IS4 family protein. (458 aa)
Xaut_0587PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mlo:mlr6190 transposase. (362 aa)
Xaut_0672PFAM: UvrD/REP helicase; KEGG: sat:SYN_02908 ATP-dependent DNA helicase. (595 aa)
Xaut_0680PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: swi:Swit_0196 helicase domain protein. (1167 aa)
Xaut_0703PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mlo:mlr6190 transposase. (362 aa)
Xaut_0753PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mlo:mlr6190 transposase. (362 aa)
Xaut_0776PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vei:Veis_3742 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1143 aa)
Xaut_0781KEGG: bja:blr8087 hypothetical protein. (886 aa)
Xaut_0782PFAM: UvrD/REP helicase; KEGG: bja:blr8088 hypothetical protein. (1107 aa)
Xaut_0785PFAM: type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: nwi:Nwi_0270 DEAD/DEAH box helicase. (791 aa)
Xaut_0786PFAM: N-6 DNA methylase; KEGG: vvy:VV0266 type I restriction-modification system methyltransferase subunit. (710 aa)
dnaE2DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1059 aa)
Xaut_0809KEGG: mes:Meso_3808 hypothetical protein. (507 aa)
Xaut_0821Recombinase; PFAM: Resolvase domain; Recombinase; KEGG: pde:Pden_3123 recombinase. (662 aa)
Xaut_1065PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL110144 putative transposon/insertion element protein. (88 aa)
Xaut_1087SMART: AAA ATPase; KEGG: pth:PTH_2877 hypothetical protein. (590 aa)
Xaut_1090PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: acr:Acry_3553 resolvase, N-terminal domain. (159 aa)
Xaut_1093PFAM: transposase IS3/IS911 family protein; KEGG: mag:amb3265 insertion element ISR1 hypothetical 10 kDa protein A3. (84 aa)
Xaut_1096PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: rpc:RPC_3652 N-6 DNA methylase. (486 aa)
Xaut_1098PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rpc:RPC_3651 type III restriction enzyme, res subunit. (1124 aa)
Xaut_1099PFAM: Resolvase domain; KEGG: jan:Jann_2896 resolvase-like. (212 aa)
Xaut_1172A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (355 aa)
Xaut_1173PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpb:RPB_1073 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family. (389 aa)
Xaut_1368KEGG: rpe:RPE_2213 hypothetical protein. (170 aa)
xseAExodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (496 aa)
Xaut_1417TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: bja:bll2553 3-methyladenine-DNA glycosylase. (223 aa)
Xaut_1426PFAM: UvrD/REP helicase; KEGG: nwi:Nwi_2360 UvrD/REP helicase. (817 aa)
Xaut_1448TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: nha:Nham_0100 DNA polymerase III, delta subunit. (342 aa)
Xaut_1459PFAM: DNA polymerase III chi subunit HolC; KEGG: rpa:RPA3059 DNA polymerase III chi subunit. (153 aa)
Xaut_1470PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rpe:RPE_0725 ATP dependent DNA ligase. (542 aa)
Xaut_1609PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL110144 putative transposon/insertion element protein. (88 aa)
Xaut_1610PFAM: transposase IS3/IS911 family protein; KEGG: mag:amb3265 insertion element ISR1 hypothetical 10 kDa protein A3. (97 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (359 aa)
xerC-2Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (354 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (720 aa)
dnaQDNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (240 aa)
gyrBDNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (813 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (727 aa)
dnaXDNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (622 aa)
Xaut_2245PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: acr:Acry_3553 resolvase, N-terminal domain. (183 aa)
Xaut_2252PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL120646 putative transposase-related protein. (131 aa)
Xaut_2285PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mlo:mll9195 transposase. (370 aa)
uvrCExcinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (779 aa)
Xaut_2373TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: nwi:Nwi_2596 phage SPO1 DNA polymerase-related protein. (307 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (1000 aa)
Xaut_2385PFAM: transposase IS3/IS911 family protein; KEGG: bja:blr2053 putative transposase. (70 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (489 aa)
Xaut_2404Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (493 aa)
Xaut_2426KEGG: pde:Pden_5114 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. (719 aa)
Xaut_2564KEGG: pnu:Pnuc_1164 hypothetical protein. (431 aa)
Xaut_2653TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: rpc:RPC_0149 MobA/MobL protein. (976 aa)
Xaut_2657PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_4139 transposase IS116/IS110/IS902. (350 aa)
Xaut_2677PFAM: transposase IS4 family protein; KEGG: nwi:Nwi_1095 transposase, IS4. (142 aa)
Xaut_2678KEGG: nwi:Nwi_2412 ISBm1, transposase orfA. (132 aa)
Xaut_2709KEGG: bbt:BBta_0480 putative transposase. (130 aa)
uvrBExcinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (866 aa)
Xaut_2851PFAM: Resolvase domain; Recombinase; KEGG: swi:Swit_3384 resolvase, N-terminal domain. (565 aa)
Xaut_2874PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mlo:mlr6190 transposase. (362 aa)
Xaut_2962PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: vfi:VF1465 superfamily I DNA and RNA helicases. (170 aa)
Xaut_2981PFAM: helicase domain protein; KEGG: gme:Gmet_3058 helicase-like. (1002 aa)
Xaut_2985PFAM: UvrD/REP helicase; KEGG: rpa:RPA2215 possible ATP-dependent exodeoxyribonuclease (subunit A); Belongs to the helicase family. UvrD subfamily. (1131 aa)
Xaut_2986KEGG: rpa:RPA2216 hypothetical protein. (884 aa)
Xaut_2988PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: swi:Swit_0196 helicase domain protein. (1167 aa)
Xaut_2990Putative ATPase; KEGG: rpa:RPA2219 possible ATPase. (1406 aa)
Xaut_3008PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mlo:mlr6190 transposase. (362 aa)
Xaut_3039PFAM: transposase IS4 family protein; KEGG: psb:Psyr_0095 transposase, IS4. (473 aa)
Xaut_3048PFAM: UvrD/REP helicase; KEGG: sat:SYN_02908 ATP-dependent DNA helicase. (608 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (643 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (169 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (343 aa)
Xaut_3300TIGRFAM: Double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: bbt:BBta_0090 putative helicase-exonuclease type V protein family, AddA subunit; Belongs to the helicase family. UvrD subfamily. (1167 aa)
mutMformamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (293 aa)
Xaut_3326KEGG: mlo:mll0558 hypothetical protein. (225 aa)
dnaE2-2DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1116 aa)
Xaut_3469KEGG: rpc:RPC_1732 hypothetical protein. (480 aa)
Xaut_3471PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL110144 putative transposon/insertion element protein. (88 aa)
Xaut_3599KEGG: rsq:Rsph17025_1727 hypothetical protein. (117 aa)
Xaut_3602PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: mmr:Mmar10_0016 DNA polymerase I. (299 aa)
Xaut_3618PFAM: MT-A70 family protein; KEGG: sit:TM1040_1679 MT-A70; Belongs to the MT-A70-like family. (194 aa)
Xaut_3637TIGRFAM: phage head-tail adaptor, putative; KEGG: reu:Reut_A2398 putative bacteriophage protein. (123 aa)
Xaut_3699PFAM: C-5 cytosine-specific DNA methylase; KEGG: mlo:mlr8517 modification methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (579 aa)
Xaut_3734PFAM: transposase IS116/IS110/IS902 family protein; KEGG: bja:bll1545 putative transposase. (340 aa)
Xaut_3735PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL110144 putative transposon/insertion element protein. (107 aa)
Xaut_3835PFAM: Uracil-DNA glycosylase superfamily; KEGG: nha:Nham_2258 uracil-DNA glycosylase superfamily. (233 aa)
Xaut_3841PFAM: HhH-GPD family protein; KEGG: rpc:RPC_4886 HhH-GPD. (217 aa)
dinBDNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (432 aa)
parCDNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (745 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (901 aa)
Xaut_4003PFAM: transposase IS116/IS110/IS902 family protein; KEGG: bja:bll1545 putative transposase. (340 aa)
Xaut_4009PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mlo:mlr6190 transposase. (362 aa)
recArecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (361 aa)
Xaut_4240TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpc:RPC_2496 exodeoxyribonuclease III (xth). (262 aa)
Xaut_4284KEGG: bbt:BBta_4522 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein. (1150 aa)
Xaut_4306TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mag:amb4254 superfamily II DNA helicase. (607 aa)
uvrAExcinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1039 aa)
gyrADNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (914 aa)
Xaut_4326KEGG: nha:Nham_2009 DNA-directed DNA polymerase. (347 aa)
Xaut_4330TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: mlo:mll0418 putative deoxyribonuclease. (273 aa)
Xaut_4365TIGRFAM: DNA ligase D; DNA ligase D 3'-phosphoesterase domain; DNA polymerase LigD polymerase domain; DNA polymerase LigD ligase region; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: mlo:mll9625 DNA ligase. (886 aa)
Xaut_4415PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nha:Nham_2055 DEAD/DEAH box helicase-like. (697 aa)
Xaut_4572PFAM: Resolvase domain; Recombinase; KEGG: pde:Pden_3123 recombinase. (584 aa)
Xaut_4587PFAM: protein of unknown function DUF1520; KEGG: sme:SMa1082 hypothetical protein. (199 aa)
Xaut_4596PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL70042 putative insertion sequence protein. (146 aa)
Xaut_4676Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rpe:RPE_3442 deoxyribodipyrimidine photo-lyase. (500 aa)
Xaut_4689Hypothetical protein; KEGG: vei:Veis_4172 DNA methylase N-4/N-6 domain protein. (241 aa)
Xaut_4690PFAM: type III restriction protein res subunit; KEGG: rru:Rru_A0242 type III restriction enzyme, res subunit. (999 aa)
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (97 aa)
parEDNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (678 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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