STRINGSTRING
Xaut_2653 Xaut_2653 Xaut_2564 Xaut_2564 Xaut_0782 Xaut_0782 Xaut_0272 Xaut_0272 Xaut_0442 Xaut_0442 Xaut_3300 Xaut_3300 Xaut_2985 Xaut_2985
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_2653TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: rpc:RPC_0149 MobA/MobL protein. (976 aa)
Xaut_2564KEGG: pnu:Pnuc_1164 hypothetical protein. (431 aa)
Xaut_0782PFAM: UvrD/REP helicase; KEGG: bja:blr8088 hypothetical protein. (1107 aa)
Xaut_0272TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: rpc:RPC_0149 MobA/MobL protein. (976 aa)
Xaut_0442TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: bbt:BBta_6372 putative conjugal transfer protein, TraA. (985 aa)
Xaut_3300TIGRFAM: Double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: bbt:BBta_0090 putative helicase-exonuclease type V protein family, AddA subunit; Belongs to the helicase family. UvrD subfamily. (1167 aa)
Xaut_2985PFAM: UvrD/REP helicase; KEGG: rpa:RPA2215 possible ATP-dependent exodeoxyribonuclease (subunit A); Belongs to the helicase family. UvrD subfamily. (1131 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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