STRINGSTRING
Xaut_1133 Xaut_1133 Xaut_2689 Xaut_2689 Xaut_4357 Xaut_4357 Xaut_4739 Xaut_4739 Xaut_2688 Xaut_2688
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_1133TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: reu:Reut_A1705 catechol dioxygenase, N-terminal. (308 aa)
Xaut_2689TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: aci:ACIAD1712 protocatechuate 3,4-dioxygenase alpha chain (3,4-PCD). (196 aa)
Xaut_4357TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: reu:Reut_A1705 catechol dioxygenase, N-terminal. (304 aa)
Xaut_4739PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: ret:RHE_CH02298 probable catechol 1,2-dioxygenase protein. (312 aa)
Xaut_2688TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bja:blr2333 protocatechuate 3,4-dioxygenase beta chain. (241 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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