STRINGSTRING
Xaut_3389 Xaut_3389 Xaut_3399 Xaut_3399 Xaut_3403 Xaut_3403 Xaut_3418 Xaut_3418 Xaut_3448 Xaut_3448 Xaut_3482 Xaut_3482 Xaut_3488 Xaut_3488 Xaut_3490 Xaut_3490 Xaut_3517 Xaut_3517 Xaut_3845 Xaut_3845 Xaut_3855 Xaut_3855 Xaut_3916 Xaut_3916 Xaut_3930 Xaut_3930 Xaut_3939 Xaut_3939 Xaut_3941 Xaut_3941 Xaut_3958 Xaut_3958 Xaut_3967 Xaut_3967 Xaut_3989 Xaut_3989 Xaut_4059 Xaut_4059 Xaut_4074 Xaut_4074 Xaut_4184 Xaut_4184 Xaut_4187 Xaut_4187 Xaut_4219 Xaut_4219 Xaut_4222 Xaut_4222 Xaut_4306 Xaut_4306 Xaut_4335 Xaut_4335 Xaut_4351 Xaut_4351 Xaut_4354 Xaut_4354 Xaut_4359 Xaut_4359 lexA lexA Xaut_4409 Xaut_4409 Xaut_4459 Xaut_4459 Xaut_4525 Xaut_4525 Xaut_4564 Xaut_4564 Xaut_4596 Xaut_4596 Xaut_4653 Xaut_4653 Xaut_4654 Xaut_4654 Xaut_4699 Xaut_4699 rpoD rpoD Xaut_1244 Xaut_1244 Xaut_1278 Xaut_1278 Xaut_1280 Xaut_1280 Xaut_1297 Xaut_1297 Xaut_1301 Xaut_1301 Xaut_1302 Xaut_1302 Xaut_1307 Xaut_1307 Xaut_1308 Xaut_1308 Xaut_1317 Xaut_1317 Xaut_1351 Xaut_1351 Xaut_1371 Xaut_1371 Xaut_1402 Xaut_1402 Xaut_1507 Xaut_1507 Xaut_1527 Xaut_1527 Xaut_1533 Xaut_1533 Xaut_1542 Xaut_1542 Xaut_1552 Xaut_1552 Xaut_1568 Xaut_1568 Xaut_1569 Xaut_1569 Xaut_1591 Xaut_1591 Xaut_1595 Xaut_1595 Xaut_1603 Xaut_1603 Xaut_1624 Xaut_1624 Xaut_1629 Xaut_1629 Xaut_1699 Xaut_1699 Xaut_1717 Xaut_1717 Xaut_1744 Xaut_1744 Xaut_1746 Xaut_1746 Xaut_1771 Xaut_1771 Xaut_1803 Xaut_1803 fur fur Xaut_1841 Xaut_1841 Xaut_1859 Xaut_1859 Xaut_1871 Xaut_1871 Xaut_1888 Xaut_1888 Xaut_1908 Xaut_1908 Xaut_1919 Xaut_1919 Xaut_1920 Xaut_1920 Xaut_1989 Xaut_1989 Xaut_2021 Xaut_2021 Xaut_2024 Xaut_2024 Xaut_2046 Xaut_2046 Xaut_2083 Xaut_2083 Xaut_2090 Xaut_2090 Xaut_2155 Xaut_2155 Xaut_2194 Xaut_2194 Xaut_2264 Xaut_2264 Xaut_2322 Xaut_2322 Xaut_2380 Xaut_2380 Xaut_2387 Xaut_2387 Xaut_2418 Xaut_2418 Xaut_2423 Xaut_2423 Xaut_2448 Xaut_2448 Xaut_2470 Xaut_2470 Xaut_2506 Xaut_2506 Xaut_2513 Xaut_2513 hrcA hrcA Xaut_2557 Xaut_2557 Xaut_2558 Xaut_2558 Xaut_2573 Xaut_2573 Xaut_2681 Xaut_2681 Xaut_2686 Xaut_2686 Xaut_2707 Xaut_2707 Xaut_2719 Xaut_2719 Xaut_2752 Xaut_2752 Xaut_2754 Xaut_2754 Xaut_2757 Xaut_2757 Xaut_2777 Xaut_2777 Xaut_2781 Xaut_2781 Xaut_2805 Xaut_2805 Xaut_2813 Xaut_2813 Xaut_2830 Xaut_2830 Xaut_2845 Xaut_2845 Xaut_2896 Xaut_2896 Xaut_2927 Xaut_2927 Xaut_2936 Xaut_2936 Xaut_2965 Xaut_2965 Xaut_2993 Xaut_2993 Xaut_3040 Xaut_3040 ruvB ruvB Xaut_3137 Xaut_3137 Xaut_3176 Xaut_3176 Xaut_3199 Xaut_3199 Xaut_3235 Xaut_3235 Xaut_3246 Xaut_3246 Xaut_3247 Xaut_3247 Xaut_3271 Xaut_3271 Xaut_3293 Xaut_3293 Xaut_3334 Xaut_3334 Xaut_3337 Xaut_3337 Xaut_3347 Xaut_3347 Xaut_3372 Xaut_3372 Xaut_0010 Xaut_0010 Xaut_0040 Xaut_0040 Xaut_0061 Xaut_0061 Xaut_0076 Xaut_0076 Xaut_0160 Xaut_0160 Xaut_0164 Xaut_0164 Xaut_0172 Xaut_0172 Xaut_0202 Xaut_0202 Xaut_0208 Xaut_0208 Xaut_0213 Xaut_0213 Xaut_0253 Xaut_0253 Xaut_0263 Xaut_0263 Xaut_0266 Xaut_0266 Xaut_0313 Xaut_0313 Xaut_0322 Xaut_0322 Xaut_0369 Xaut_0369 Xaut_0373 Xaut_0373 Xaut_0379 Xaut_0379 Xaut_0385 Xaut_0385 Xaut_0414 Xaut_0414 Xaut_0431 Xaut_0431 Xaut_0481 Xaut_0481 Xaut_0485 Xaut_0485 Xaut_0520 Xaut_0520 Xaut_0591 Xaut_0591 Xaut_0606 Xaut_0606 Xaut_0630 Xaut_0630 Xaut_0634 Xaut_0634 Xaut_0651 Xaut_0651 Xaut_0687 Xaut_0687 Xaut_0734 Xaut_0734 Xaut_0738 Xaut_0738 Xaut_0774 Xaut_0774 Xaut_0855 Xaut_0855 Xaut_0874 Xaut_0874 Xaut_0881 Xaut_0881 Xaut_0895 Xaut_0895 Xaut_0910 Xaut_0910 Xaut_0924 Xaut_0924 Xaut_0926 Xaut_0926 Xaut_0931 Xaut_0931 Xaut_0948 Xaut_0948 Xaut_0951 Xaut_0951 Xaut_0952 Xaut_0952 Xaut_0958 Xaut_0958 Xaut_0971 Xaut_0971 Xaut_0972 Xaut_0972 Xaut_0976 Xaut_0976 Xaut_1015 Xaut_1015 Xaut_1043 Xaut_1043 Xaut_1061 Xaut_1061 Xaut_1075 Xaut_1075 Xaut_1086 Xaut_1086 Xaut_1106 Xaut_1106 Xaut_1114 Xaut_1114 Xaut_1123 Xaut_1123 Xaut_1131 Xaut_1131 Xaut_1168 Xaut_1168 Xaut_1184 Xaut_1184
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_3389PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bja:blr3467 two-component response regulator. (211 aa)
Xaut_3399Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ppf:Pput_2735 two component transcriptional regulator, winged helix family. (223 aa)
Xaut_3403Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: DNA-binding response regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR. (236 aa)
Xaut_3418PFAM: regulatory protein ArsR; KEGG: rpd:RPD_3414 regulatory protein, ArsR. (99 aa)
Xaut_3448Putative transcriptional regulator, AsnC family; PFAM: regulatory protein AsnC/Lrp family; KEGG: bmb:BruAb2_0508 proline dehydrogenase transcriptional activator. (156 aa)
Xaut_3482Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpa:RPA0731 transcriptional regulator, LysR family. (309 aa)
Xaut_3488Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_6533 two-component cell cycle transcriptional regulator CtrA. (233 aa)
Xaut_3490RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 4 type 2; KEGG: rpb:RPB_3909 sigma-24 (FecI-like). (189 aa)
Xaut_3517Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO2742 putative two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis. (238 aa)
Xaut_3845Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpb:RPB_0614 ferric uptake regulator, FUR family; Belongs to the Fur family. (208 aa)
Xaut_3855Putative transcriptional regulator, ModE family; PFAM: regulatory protein LysR; KEGG: nwi:Nwi_0934 transcriptional regulatory protein, LysR. (117 aa)
Xaut_3916TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rpe:RPE_3377 DNA protecting protein DprA. (378 aa)
Xaut_3930PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pmy:Pmen_3633 GntR domain protein. (252 aa)
Xaut_3939Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO0857 putative transcriptional regulatory protein, LysR family. (320 aa)
Xaut_3941PFAM: regulatory protein ArsR; KEGG: rpd:RPD_3414 regulatory protein, ArsR. (99 aa)
Xaut_3958PFAM: low molecular weight phosphotyrosine protein phosphatase; SMART: regulatory protein ArsR; KEGG: nha:Nham_4431 transcriptional regulator, ArsR family. (295 aa)
Xaut_3967PFAM: transcriptional regulator PadR family protein; KEGG: mta:Moth_2223 transcriptional regulator, PadR-like family. (152 aa)
Xaut_3989Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family. (336 aa)
Xaut_4059Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_C0658 transcriptional regulator, LysR family. (315 aa)
Xaut_4074PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mva:Mvan_0606 GntR domain protein. (261 aa)
Xaut_4184PFAM: regulatory protein ArsR; KEGG: sru:SRU_2462 bacterial regulatory proteins, ArsR family. (135 aa)
Xaut_4187Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rpb:RPB_4259 putative sigma factor. (419 aa)
Xaut_4219PFAM: regulatory protein MarR; KEGG: rpb:RPB_1659 transcriptional regulator, MarR family. (180 aa)
Xaut_4222Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_3398 oxidative stress transcriptional regulator. (302 aa)
Xaut_4306TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mag:amb4254 superfamily II DNA helicase. (607 aa)
Xaut_4335Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_7208 putative transcriptional regulatory protein, LysR family. (297 aa)
Xaut_4351PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pde:Pden_2929 GntR domain protein. (265 aa)
Xaut_4354Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; KEGG: ecv:APECO1_3389 putative phosphosugar isomerases. (297 aa)
Xaut_4359Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1965 benzoate operon transcriptional regulator,LysR-family. (303 aa)
lexASOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (237 aa)
Xaut_4409Putative transcriptional regulator; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (242 aa)
Xaut_4459KEGG: rpb:RPB_2383 hypothetical protein. (115 aa)
Xaut_4525PFAM: Mu transposase; Mu DNA binding I gamma subdomain; Transposase-like Mu; KEGG: rsq:Rsph17025_2121 integrase, catalytic region. (656 aa)
Xaut_4564Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr5093 transcriptional regulatory protein. (276 aa)
Xaut_4596PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL70042 putative insertion sequence protein. (146 aa)
Xaut_4653Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mes:Meso_0183 transcriptional regulator, LysR family. (317 aa)
Xaut_4654Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr1043 transcriptional regulatory protein. (238 aa)
Xaut_4699Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gbe:GbCGDNIH1_0176 transcriptional regulators, LysR family. (320 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (666 aa)
Xaut_1244Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; Helix-turn-helix type 11 domain protein; KEGG: reh:H16_B1718 transcriptional regulator, GntR-family. (229 aa)
Xaut_1278PFAM: helix-turn-helix HxlR type; KEGG: pfl:PFL_0787 transcriptional regulator, putative. (113 aa)
Xaut_1280Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mag:amb3243 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (225 aa)
Xaut_1297PFAM: regulatory protein MarR; KEGG: bms:BR1572 transcriptional regulator, MarR family. (132 aa)
Xaut_1301PFAM: regulatory protein MarR; KEGG: bja:blr0347 transcriptional regulatory protein. (144 aa)
Xaut_1302PFAM: regulatory protein MarR; KEGG: bja:blr2331 transcriptional regulatory protein. (154 aa)
Xaut_1307PFAM: regulatory protein MarR; KEGG: pde:Pden_3512 transcriptional regulator, MarR family. (159 aa)
Xaut_1308PFAM: protein of unknown function DUF1153; KEGG: rpe:RPE_0964 protein of unknown function DUF1153. (91 aa)
Xaut_1317Transcriptional regulator, GntR family; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rpa:RPA0696 possible transcriptional regulator, GntR family. (271 aa)
Xaut_1351Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_4822 putative transcriptional regulatory protein (nitrogen assimilation control protein). (325 aa)
Xaut_1371Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rsh:Rsph17029_3779 transcriptional regulator, LysR family. (308 aa)
Xaut_1402Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_A3370 transcriptional regulator, GntR family. (341 aa)
Xaut_1507Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB3003 putative LysR-family transcriptional regulator. (304 aa)
Xaut_1527PFAM: regulatory protein ArsR; KEGG: rpa:RPA4474 transcriptional regulator, ArsR family. (124 aa)
Xaut_1533Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mlo:mll7953 two-component response regulator. (223 aa)
Xaut_1542Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll2166 transcriptional regulatory protein. (296 aa)
Xaut_1552PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pde:Pden_1123 transcriptional regulator, fis family. (199 aa)
Xaut_1568PFAM: transcriptional regulator TrmB; KEGG: rpa:RPA4161 hypothetical protein. (264 aa)
Xaut_1569Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_C0293 transcriptional regulator, GntR family. (230 aa)
Xaut_1591Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo1161 putative transcriptional regulator,LysR family. (313 aa)
Xaut_1595RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rpa:RPA0639 RNA polymerase ECF-type sigma factor. (181 aa)
Xaut_1603Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pde:Pden_4672 transcriptional regulator, GntR family. (338 aa)
Xaut_1624PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A1563 transcriptional regulator, GntR-family. (238 aa)
Xaut_1629RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rru:Rru_A0722 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily. (230 aa)
Xaut_1699PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mag:amb1553 transcriptional regulator. (513 aa)
Xaut_1717RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rpd:RPD_0971 sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
Xaut_1744PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: swi:Swit_5293 response regulator receiver protein. (213 aa)
Xaut_1746Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: fixK; transcriptional regulator, Crp family; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (236 aa)
Xaut_1771Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpb:RPB_0381 two component transcriptional regulator, winged helix family. (228 aa)
Xaut_1803Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lxx:Lxx02580 two-component system, regulatory protein. (232 aa)
furFerric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bra:BRADO0039 ferric uptake regulation protein (ferric uptake regulator, Fur family); Belongs to the Fur family. (144 aa)
Xaut_1841PFAM: cell divisionFtsK/SpoIIIE; KEGG: rpc:RPC_0276 cell divisionFtsK/SpoIIIE. (826 aa)
Xaut_1859PFAM: AMP-dependent synthetase and ligase; KEGG: pfo:Pfl_2870 AMP-dependent synthetase and ligase. (503 aa)
Xaut_1871Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bms:BRA0178 transcriptional regulator, LysR family. (310 aa)
Xaut_1888Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nha:Nham_0618 putative ferric uptake regulator, FUR family; Belongs to the Fur family. (175 aa)
Xaut_1908Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: mlo:mlr5157 hypothetical protein. (163 aa)
Xaut_1919Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: acr:Acry_2414 transcriptional regulator, LysR family. (318 aa)
Xaut_1920PFAM: Activator of Hsp90 ATPase 1 family protein; SMART: regulatory protein ArsR; KEGG: aau:AAur_1126 putative transcriptional regulator, ArsR family. (260 aa)
Xaut_1989PFAM: regulatory protein MarR; KEGG: mes:Meso_3221 transcriptional regulator, MarR family. (164 aa)
Xaut_2021RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: jan:Jann_3565 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
Xaut_2024PFAM: response regulator receiver; KEGG: two-component response regulator. (263 aa)
Xaut_2046Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4920 probable LysR-family transcriptional regulator. (287 aa)
Xaut_2083Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rpb:RPB_1475 transcriptional regulator, Crp/Fnr family. (258 aa)
Xaut_2090Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A0606 transcriptional regulator, LysR family. (318 aa)
Xaut_2155Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpe:RPE_3989 two component transcriptional regulator, winged helix family. (261 aa)
Xaut_2194Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll3953 transcriptional regulatory protein. (307 aa)
Xaut_2264Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc0550 probable response regulator transcription regulator protein. (221 aa)
Xaut_2322Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00818 putative hydrogen peroxide-inducible genes activator (morphology and auto-aggregation control protein); Belongs to the LysR transcriptional regulatory family. (298 aa)
Xaut_2380PFAM: Helix-turn-helix type 11 domain protein; KEGG: sme:SMc02902 putative transcription regulator protein. (228 aa)
Xaut_2387Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_3196 nodulation protein D1; Belongs to the LysR transcriptional regulatory family. (303 aa)
Xaut_2418PFAM: ROK family protein; KEGG: sme:SMc02172 putative transcription regulator protein. (410 aa)
Xaut_2423Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aha:AHA_3966 DNA-binding response regulator. (240 aa)
Xaut_2448Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ade:Adeh_2242 transcriptional regulator, LysR family. (303 aa)
Xaut_2470PFAM: beta-lactamase domain protein; KEGG: nha:Nham_0754 beta-lactamase-like. (305 aa)
Xaut_2506PFAM: response regulator receiver; ANTAR domain protein; KEGG: bbt:BBta_4139 putative two-component response regulator. (221 aa)
Xaut_2513Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr4427 transcriptional regulatory protein. (268 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (366 aa)
Xaut_2557PFAM: regulatory protein MarR; KEGG: rpb:RPB_4174 transcriptional regulator, MarR family. (183 aa)
Xaut_2558Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpe:RPE_1425 two component transcriptional regulator, winged helix family. (239 aa)
Xaut_2573Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5671 transcriptional regulator, LysR family. (320 aa)
Xaut_2681Putative transcriptional regulator; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: nmu:Nmul_A1629 putative transcriptional regulator. (223 aa)
Xaut_2686Transcriptional regulator, LysR family; TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb20580 putative transcriptional activator of the pca operon, LysR family protein. (303 aa)
Xaut_2707PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr3665 transcriptional regulatory protein. (292 aa)
Xaut_2719Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atu:Atu4291 transcriptional regulator, LysR family. (310 aa)
Xaut_2752PFAM: regulatory protein AsnC/Lrp family; KEGG: rpb:RPB_1513 transcriptional regulator, AsnC family. (180 aa)
Xaut_2754Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpc:RPC_3839 transcriptional regulator, LysR family. (296 aa)
Xaut_2757Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B2337 transcriptional regulator, LysR family. (292 aa)
Xaut_2777RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rsh:Rsph17029_3603 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
Xaut_2781RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ppu:PP_4244 ferric regulator PfrI; Belongs to the sigma-70 factor family. ECF subfamily. (260 aa)
Xaut_2805PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: atc:AGR_L_119 hypothetical protein. (302 aa)
Xaut_2813TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: nha:Nham_0160 transcriptional regulator, AraC family. (309 aa)
Xaut_2830Methyltransferase type 11; PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: bov:BOV_1407 transcriptional regulator, ArsR family. (349 aa)
Xaut_2845Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpe:RPE_0821 two component transcriptional regulator, winged helix family. (232 aa)
Xaut_2896PFAM: regulatory protein ArsR; KEGG: rpc:RPC_3223 transcriptional regulator, ArsR family. (146 aa)
Xaut_2927Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1036 LysR-family transcriptional regulator. (308 aa)
Xaut_2936Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B2666 transcriptional regulator, LysR family. (292 aa)
Xaut_2965Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMa1893 putative LysR-family transcriptional activator. (291 aa)
Xaut_2993Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family. (319 aa)
Xaut_3040TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sal:Sala_0536 transcriptional regulator, BadM/Rrf2 family. (149 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (343 aa)
Xaut_3137PFAM: cell divisionFtsK/SpoIIIE; KEGG: sme:SMb20595 putative cell division protein FtsK like protein; Belongs to the FtsK/SpoIIIE/SftA family. (1040 aa)
Xaut_3176Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_3067 putative two-component transcriptional regulator. (223 aa)
Xaut_3199Putative transcriptional regulator, ModE family; PFAM: regulatory protein LysR; KEGG: bra:BRADO1762 putative transcriptional regulatory protein, LysR family; putative molybdenum transport regulator, ModE. (162 aa)
Xaut_3235Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: atc:AGR_L_2095 DNA-binding response regulator VCA0532. (228 aa)
Xaut_3246Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH00729 probable transcriptional regulator protein, LysR family. (296 aa)
Xaut_3247Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: acr:Acry_1792 transcriptional regulator, LysR family. (301 aa)
Xaut_3271Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: reu:Reut_A3276 regulatory protein, MarR. (155 aa)
Xaut_3293Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bms:BR0352 transcriptional regulator, LysR family. (337 aa)
Xaut_3334PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: mes:Meso_2455 transcriptional regulator, MarR family. (151 aa)
Xaut_3337Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:RL2733 putative LysR family transcriptional regulator. (302 aa)
Xaut_3347PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rle:pRL120181 putative GntR family transcriptional regulator. (255 aa)
Xaut_3372PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PF00306 probable transcriptional regulator protein, GntR family. (299 aa)
Xaut_0010Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sme:SMa1759 putative GntR-family transcriptional regulator. (239 aa)
Xaut_0040Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_1929 transcriptional regulator, GntR family. (227 aa)
Xaut_0061Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: sme:SMc01945 putative transcription regulator protein. (171 aa)
Xaut_0076TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rru:Rru_A3795 transcriptional regulator, BadM/Rrf2 family. (146 aa)
Xaut_0160Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: mlo:mll4511 cinnamoyl ester hydrolase. (130 aa)
Xaut_0164PFAM: transcriptional regulator PadR family protein; KEGG: rpc:RPC_3227 transcriptional regulator, PadR-like family. (200 aa)
Xaut_0172Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rle:RL0905 putative GntR family transcriptional regulator. (311 aa)
Xaut_0202Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_1991 response regulator in two-component regulatory system with PhoR (or CreC). (233 aa)
Xaut_0208TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mlo:mll4516 hypothetical protein. (148 aa)
Xaut_0213PFAM: regulatory protein AsnC/Lrp family; KEGG: bbt:BBta_2829 putative transcriptional regulatory protein, AsnC/Lrp family. (153 aa)
Xaut_0253RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sme:SMc04051 putative RNA polymerase sigma-E factor (sigma-24) protein; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
Xaut_0263RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bja:bll6484 ECF sigma factor. (168 aa)
Xaut_0266Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO0267 putative transcriptional regulatory protein, LysR family. (313 aa)
Xaut_0313Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: ret:RHE_CH02586 putative transcriptional regulator protein. (121 aa)
Xaut_0322Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A0871 putative transcriptional regulator. (305 aa)
Xaut_0369Putative transcriptional regulator; KEGG: ret:RHE_PE00301 hypothetical protein. (177 aa)
Xaut_0373Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bbt:BBta_3219 two-component response transcriptional regulator (OmpR family). (238 aa)
Xaut_0379PFAM: regulatory protein MarR; KEGG: reh:H16_B0493 transcriptional regulator, MarR-family. (195 aa)
Xaut_0385SMART: regulatory protein LuxR; KEGG: reh:H16_B0652 transcriptional regulator, LuxR-family. (378 aa)
Xaut_0414Putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rme:Rmet_5794 transcriptional regulator, GntR family. (460 aa)
Xaut_0431Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family. (249 aa)
Xaut_0481PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mlo:mll0250 transcription regulator. (284 aa)
Xaut_0485Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_4357 transcriptional regulator, GntR family. (242 aa)
Xaut_0520Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A2899 putative GntR-family transcription regulator. (225 aa)
Xaut_0591PFAM: filamentation induced by cAMP protein Fic; KEGG: atc:AGR_pAT_503 hypothetical protein. (373 aa)
Xaut_0606Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family. (305 aa)
Xaut_0630Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL90211 putative LysR family transcriptional regulator. (292 aa)
Xaut_0634Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nha:Nham_3683 two component transcriptional regulator, winged helix family. (255 aa)
Xaut_0651PFAM: regulatory protein MarR; KEGG: bxe:Bxe_B1065 transcriptional regulator, MarR family. (172 aa)
Xaut_0687Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family. (328 aa)
Xaut_0734Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_1785 putative transcriptional regulatory protein, LysR family. (314 aa)
Xaut_0738Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_1510 transcriptional regulator, LysR family. (314 aa)
Xaut_0774PFAM: Sigma-70 region 4 type 2; KEGG: vei:Veis_3740 RNA polymerase, sigma-24 subunit, ECF subfamily. (263 aa)
Xaut_0855Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_1102 transcriptional regulator, LysR family. (308 aa)
Xaut_0874PFAM: regulatory protein ArsR; KEGG: pde:Pden_3342 regulatory protein, ArsR. (119 aa)
Xaut_0881Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll3953 transcriptional regulatory protein. (316 aa)
Xaut_0895Transcriptional regulator, PaaX family; TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: bja:blr2890 phenylacetic acid degradation operon negative regulatory protein. (305 aa)
Xaut_0910PFAM: regulatory protein MarR; KEGG: pna:Pnap_2122 transcriptional regulator, MarR family. (189 aa)
Xaut_0924PFAM: regulatory protein LuxR; KEGG: gbe:GbCGDNIH1_1823 transcriptional regulator, LuxR family. (359 aa)
Xaut_0926PFAM: transcriptional regulator TrmB; regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr5283 transcriptional regulatory protein. (270 aa)
Xaut_0931PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ecs:ECs0401 transcriptional regulator for mhp operon. (266 aa)
Xaut_0948Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0510 transcriptional regulator, LysR family. (285 aa)
Xaut_0951Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; helix-turn-helix Fis-type; LysR substrate-binding; KEGG: bja:blr7904 transcriptional regulatory protein. (289 aa)
Xaut_0952RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_PF00056 putative RNA polymerase sigma factor protein, ECF family. (179 aa)
Xaut_0958RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nha:Nham_4408 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
Xaut_0971Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C6890 transcriptional regulator, LysR family. (309 aa)
Xaut_0972Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gvi:gll3758 LysR family transcriptional regulatory protein. (299 aa)
Xaut_0976RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rme:Rmet_0597 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
Xaut_1015Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb20494 putative transcriptional regulator protein. (311 aa)
Xaut_1043Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4297 LysR-family transcriptional regulator. (316 aa)
Xaut_1061Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mes:Meso_3053 transcriptional regulator, LysR family. (301 aa)
Xaut_1075Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4906 two component transcriptional regulator, winged helix family. (220 aa)
Xaut_1086PFAM: response regulator receiver; ANTAR domain protein; KEGG: mlo:mlr2855 two-component response regulator. (202 aa)
Xaut_1106PFAM: regulatory protein ArsR; KEGG: mes:Meso_2290 transcriptional regulator, ArsR family. (103 aa)
Xaut_1114PFAM: regulatory protein MarR; response regulator receiver; KEGG: swi:Swit_3504 response regulator receiver protein. (266 aa)
Xaut_1123TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B5569 regulatory protein, IclR. (258 aa)
Xaut_1131Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_1173 transcriptional regulator, LysR family. (310 aa)
Xaut_1168PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: transcriptional regulator, LysR family. (291 aa)
Xaut_1184KEGG: bra:BRADO4532 conserved hypothetical protein; putative nicotinic acid mononucleotide (NMN) biosynthesis protein. (324 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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