STRINGSTRING
Xaut_1419 Xaut_1419 Xaut_1545 Xaut_1545 Xaut_2227 Xaut_2227 Xaut_2393 Xaut_2393 crtY crtY crtI crtI Xaut_4039 Xaut_4039 Xaut_4320 Xaut_4320 Xaut_4700 Xaut_4700 Xaut_0917 Xaut_0917
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_1419PFAM: amine oxidase; KEGG: bbt:BBta_0261 hypothetical protein. (419 aa)
Xaut_1545PFAM: amine oxidase; Methyltransferase type 11; KEGG: bja:bll5408 hypothetical protein. (732 aa)
Xaut_2227PFAM: monooxygenase FAD-binding; KEGG: rha:RHA1_ro04915 monooxygenase. (552 aa)
Xaut_2393PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bvi:Bcep1808_1633 monooxygenase, FAD-binding. (376 aa)
crtYTIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase; KEGG: psa:PST_3874 lycopene cyclase. (385 aa)
crtITIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: psa:PST_3873 phytoene desaturase. (504 aa)
Xaut_4039PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bpa:BPP4146 putative oxidoreductase. (306 aa)
Xaut_4320PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro04915 monooxygenase. (522 aa)
Xaut_4700TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_1949 sarcosine oxidase, beta subunit. (417 aa)
Xaut_0917PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nca:Noca_0618 NADH:flavin oxidoreductase/NADH oxidase. (734 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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