STRINGSTRING
Xaut_0002 Xaut_0002 mutS mutS Xaut_0672 Xaut_0672 Xaut_0776 Xaut_0776 xseA xseA Xaut_1426 Xaut_1426 Xaut_1448 Xaut_1448 Xaut_1459 Xaut_1459 Xaut_1470 Xaut_1470 ligA ligA dnaQ dnaQ dnaX dnaX Xaut_2426 Xaut_2426 Xaut_3048 Xaut_3048 Xaut_3049 Xaut_3049 mutL mutL Xaut_3622 Xaut_3622 Xaut_3681 Xaut_3681 Xaut_4284 Xaut_4284 Xaut_4316 Xaut_4316 Xaut_4326 Xaut_4326 xseB xseB Xaut_4751 Xaut_4751
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Xaut_0002DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (373 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (921 aa)
Xaut_0672PFAM: UvrD/REP helicase; KEGG: sat:SYN_02908 ATP-dependent DNA helicase. (595 aa)
Xaut_0776PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vei:Veis_3742 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1143 aa)
xseAExodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (496 aa)
Xaut_1426PFAM: UvrD/REP helicase; KEGG: nwi:Nwi_2360 UvrD/REP helicase. (817 aa)
Xaut_1448TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: nha:Nham_0100 DNA polymerase III, delta subunit. (342 aa)
Xaut_1459PFAM: DNA polymerase III chi subunit HolC; KEGG: rpa:RPA3059 DNA polymerase III chi subunit. (153 aa)
Xaut_1470PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rpe:RPE_0725 ATP dependent DNA ligase. (542 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (720 aa)
dnaQDNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (240 aa)
dnaXDNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (622 aa)
Xaut_2426KEGG: pde:Pden_5114 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. (719 aa)
Xaut_3048PFAM: UvrD/REP helicase; KEGG: sat:SYN_02908 ATP-dependent DNA helicase. (608 aa)
Xaut_3049PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: mag:amb2073 DNA polymerase III epsilon subunit and related 3'-5' exonuclease. (298 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (643 aa)
Xaut_3622TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rsq:Rsph17025_0451 single-strand binding protein. (158 aa)
Xaut_3681PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: mhu:Mhun_0639 exonuclease. (200 aa)
Xaut_4284KEGG: bbt:BBta_4522 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein. (1150 aa)
Xaut_4316Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (180 aa)
Xaut_4326KEGG: nha:Nham_2009 DNA-directed DNA polymerase. (347 aa)
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (97 aa)
Xaut_4751TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rpc:RPC_2813 single-stranded-DNA-specific exonuclease RecJ. (626 aa)
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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