STRINGSTRING
LOC103174237 LOC103174237 mnat1 mnat1 gtf2e1 gtf2e1 ccnh ccnh ercc3 ercc3 gtf2b gtf2b gtf2h2 gtf2h2 gtf2h1 gtf2h1 gtf2f2 gtf2f2 gtf2h5 gtf2h5 gtf2h3 gtf2h3 gtf2e2 gtf2e2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC103174237HELICc2 domain-containing protein. (108 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
gtf2e1General transcription factor IIE subunit 1. (429 aa)
ccnhCYCLIN domain-containing protein; Belongs to the cyclin family. (340 aa)
ercc3Uncharacterized protein. (783 aa)
gtf2bTFIIB-type domain-containing protein. (321 aa)
gtf2h2General transcription factor IIH subunit. (398 aa)
gtf2h1Uncharacterized protein. (592 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (288 aa)
gtf2h5General transcription factor IIH subunit 5. (71 aa)
gtf2h3Uncharacterized protein. (320 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (289 aa)
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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