23 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tead1	TEA domain-containing protein. (420 aa)
	stk3	Uncharacterized protein. (497 aa)
	vgll4	Uncharacterized protein. (284 aa)
	ENSCMIP00000011699	Uncharacterized protein. (246 aa)
	yap1	WW domain-containing protein. (522 aa)
	tead3	Transcriptional enhancer factor TEF-5; Transcription factor which plays a key role in the Hippo signaling pathway, a pathway involved in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. (428 aa)
	nf2	FERM domain-containing protein. (599 aa)
	lats1	Uncharacterized protein. (1168 aa)
	stk4	Uncharacterized protein. (452 aa)
	LOC103191014	Uncharacterized protein. (218 aa)
	lats2	Uncharacterized protein. (1155 aa)
	wwtr1	Uncharacterized protein. (438 aa)
	vgll1	Uncharacterized protein. (271 aa)
	amotl2	Angiomotin_C domain-containing protein. (819 aa)
	sav1	Uncharacterized protein. (389 aa)
	LOC103188450	FERM domain-containing protein. (605 aa)
	amotl1	Angiomotin_C domain-containing protein. (895 aa)
	LOC103179462	Uncharacterized protein. (346 aa)
	amot	Angiomotin_C domain-containing protein. (859 aa)
	LOC103177678	Mps one binder kinase activator-like 1a. (214 aa)
	mpdz	Uncharacterized protein. (1999 aa)
	tead2	TEA domain-containing protein. (431 aa)
	cenpt	Centromere protein T. (759 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000011699	LOC103191014	ENSCMIP00000011699	ENSCMIP00000019682	Uncharacterized protein.	Uncharacterized protein.	0.406
ENSCMIP00000011699	cenpt	ENSCMIP00000011699	ENSCMIP00000046279	Uncharacterized protein.	Centromere protein T.	0.479
ENSCMIP00000011699	lats1	ENSCMIP00000011699	ENSCMIP00000017802	Uncharacterized protein.	Uncharacterized protein.	0.556
ENSCMIP00000011699	lats2	ENSCMIP00000011699	ENSCMIP00000022074	Uncharacterized protein.	Uncharacterized protein.	0.556
ENSCMIP00000011699	sav1	ENSCMIP00000011699	ENSCMIP00000027815	Uncharacterized protein.	Uncharacterized protein.	0.472
ENSCMIP00000011699	tead1	ENSCMIP00000011699	ENSCMIP00000002276	Uncharacterized protein.	TEA domain-containing protein.	0.479
ENSCMIP00000011699	tead2	ENSCMIP00000011699	ENSCMIP00000045175	Uncharacterized protein.	TEA domain-containing protein.	0.479
ENSCMIP00000011699	tead3	ENSCMIP00000011699	ENSCMIP00000011810	Uncharacterized protein.	Transcriptional enhancer factor TEF-5; Transcription factor which plays a key role in the Hippo signaling pathway, a pathway involved in organ size control and tumor suppression by restricting proliferation and promoting apoptosis.	0.479
ENSCMIP00000011699	yap1	ENSCMIP00000011699	ENSCMIP00000011714	Uncharacterized protein.	WW domain-containing protein.	0.421
LOC103177678	LOC103191014	ENSCMIP00000040539	ENSCMIP00000019682	Mps one binder kinase activator-like 1a.	Uncharacterized protein.	0.841
LOC103177678	amot	ENSCMIP00000040539	ENSCMIP00000040143	Mps one binder kinase activator-like 1a.	Angiomotin_C domain-containing protein.	0.545
LOC103177678	amotl1	ENSCMIP00000040539	ENSCMIP00000028756	Mps one binder kinase activator-like 1a.	Angiomotin_C domain-containing protein.	0.545
LOC103177678	amotl2	ENSCMIP00000040539	ENSCMIP00000026205	Mps one binder kinase activator-like 1a.	Angiomotin_C domain-containing protein.	0.662
LOC103177678	lats1	ENSCMIP00000040539	ENSCMIP00000017802	Mps one binder kinase activator-like 1a.	Uncharacterized protein.	0.924
LOC103177678	lats2	ENSCMIP00000040539	ENSCMIP00000022074	Mps one binder kinase activator-like 1a.	Uncharacterized protein.	0.924
LOC103177678	sav1	ENSCMIP00000040539	ENSCMIP00000027815	Mps one binder kinase activator-like 1a.	Uncharacterized protein.	0.825
LOC103177678	stk3	ENSCMIP00000040539	ENSCMIP00000005867	Mps one binder kinase activator-like 1a.	Uncharacterized protein.	0.711
LOC103177678	stk4	ENSCMIP00000040539	ENSCMIP00000018140	Mps one binder kinase activator-like 1a.	Uncharacterized protein.	0.711
LOC103177678	wwtr1	ENSCMIP00000040539	ENSCMIP00000023714	Mps one binder kinase activator-like 1a.	Uncharacterized protein.	0.644
LOC103177678	yap1	ENSCMIP00000040539	ENSCMIP00000011714	Mps one binder kinase activator-like 1a.	WW domain-containing protein.	0.644