6 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tmem243	Transmembrane protein C7orf23-like protein. (118 aa)
	dmtf1	Uncharacterized protein. (782 aa)
	crot	Carn_acyltransf domain-containing protein. (613 aa)
	rundc3b	RUN domain-containing protein. (443 aa)
	slc25a40	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (341 aa)
	armc1	Armadillo repeat-containing protein 1. (275 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
armc1	dmtf1	ENSCMIP00000046412	ENSCMIP00000011049	Armadillo repeat-containing protein 1.	Uncharacterized protein.	0.613
crot	rundc3b	ENSCMIP00000037403	ENSCMIP00000039038	Carn_acyltransf domain-containing protein.	RUN domain-containing protein.	0.553
crot	slc25a40	ENSCMIP00000037403	ENSCMIP00000039180	Carn_acyltransf domain-containing protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.522
dmtf1	armc1	ENSCMIP00000011049	ENSCMIP00000046412	Uncharacterized protein.	Armadillo repeat-containing protein 1.	0.613
dmtf1	rundc3b	ENSCMIP00000011049	ENSCMIP00000039038	Uncharacterized protein.	RUN domain-containing protein.	0.553
rundc3b	crot	ENSCMIP00000039038	ENSCMIP00000037403	RUN domain-containing protein.	Carn_acyltransf domain-containing protein.	0.553
rundc3b	dmtf1	ENSCMIP00000039038	ENSCMIP00000011049	RUN domain-containing protein.	Uncharacterized protein.	0.553
rundc3b	slc25a40	ENSCMIP00000039038	ENSCMIP00000039180	RUN domain-containing protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.581
slc25a40	crot	ENSCMIP00000039180	ENSCMIP00000037403	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Carn_acyltransf domain-containing protein.	0.522
slc25a40	rundc3b	ENSCMIP00000039180	ENSCMIP00000039038	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	RUN domain-containing protein.	0.581