(6 nodes) Mixed, incl. ATP-dependent RNA helicase eIF4A, DEAD-box helicase domain, and RNA strand-exchange activity network (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103173311	Uncharacterized protein; Belongs to the DEAD box helicase family. (350 aa)
	eif4g2	Uncharacterized protein. (892 aa)
	eif4b	RRM domain-containing protein. (648 aa)
	LOC103182130	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
	eif4a2	Uncharacterized protein; Belongs to the DEAD box helicase family. (422 aa)
	Eif4g1	Uncharacterized protein. (81 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Eif4g1	LOC103173311	ENSCMIP00000019597	ENSCMIP00000004803	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.979
Eif4g1	LOC103182130	ENSCMIP00000019597	ENSCMIP00000015742	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.977
Eif4g1	eif4a2	ENSCMIP00000019597	ENSCMIP00000018603	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.979
Eif4g1	eif4b	ENSCMIP00000019597	ENSCMIP00000007449	Uncharacterized protein.	RRM domain-containing protein.	0.787
Eif4g1	eif4g2	ENSCMIP00000019597	ENSCMIP00000005916	Uncharacterized protein.	Uncharacterized protein.	0.922
LOC103173311	Eif4g1	ENSCMIP00000004803	ENSCMIP00000019597	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.979
LOC103173311	LOC103182130	ENSCMIP00000004803	ENSCMIP00000015742	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.822
LOC103173311	eif4a2	ENSCMIP00000004803	ENSCMIP00000018603	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.901
LOC103173311	eif4b	ENSCMIP00000004803	ENSCMIP00000007449	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.983
LOC103173311	eif4g2	ENSCMIP00000004803	ENSCMIP00000005916	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.988
LOC103182130	Eif4g1	ENSCMIP00000015742	ENSCMIP00000019597	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.977
LOC103182130	LOC103173311	ENSCMIP00000015742	ENSCMIP00000004803	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.822
LOC103182130	eif4a2	ENSCMIP00000015742	ENSCMIP00000018603	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.822
LOC103182130	eif4b	ENSCMIP00000015742	ENSCMIP00000007449	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	RRM domain-containing protein.	0.857
LOC103182130	eif4g2	ENSCMIP00000015742	ENSCMIP00000005916	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.984
eif4a2	Eif4g1	ENSCMIP00000018603	ENSCMIP00000019597	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.979
eif4a2	LOC103173311	ENSCMIP00000018603	ENSCMIP00000004803	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.901
eif4a2	LOC103182130	ENSCMIP00000018603	ENSCMIP00000015742	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.822
eif4a2	eif4b	ENSCMIP00000018603	ENSCMIP00000007449	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.983
eif4a2	eif4g2	ENSCMIP00000018603	ENSCMIP00000005916	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.988