40 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gstp1	GST N-terminal domain-containing protein. (220 aa)
	slc7a11	Uncharacterized protein. (494 aa)
	LOC103174016	GST C-terminal domain-containing protein. (88 aa)
	LOC103179505	Uncharacterized protein. (549 aa)
	gclc	Uncharacterized protein. (640 aa)
	LOC103178998	Glutathione S-transferase 3-like protein. (222 aa)
	ptges2	Uncharacterized protein; Belongs to the GST superfamily. (342 aa)
	ggt7	Uncharacterized protein. (738 aa)
	LOC103182460	Glutathione S-transferase Mu 3; Belongs to the GST superfamily. (219 aa)
	ENSCMIP00000037144	Uncharacterized protein. (156 aa)
	LOC103179940	Uncharacterized protein. (611 aa)
	gsr	Uncharacterized protein. (510 aa)
	LOC103188028	Uncharacterized protein; Belongs to the GST superfamily. (241 aa)
	LOC103184007	Uncharacterized protein. (163 aa)
	LOC103186674	Uncharacterized protein. (204 aa)
	ENSCMIP00000032813	Uncharacterized protein. (156 aa)
	idh1	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (426 aa)
	LOC103183976	Uncharacterized protein. (558 aa)
	gdap1l1	Uncharacterized protein. (314 aa)
	LOC103189439	Amino acid transporter. (543 aa)
	hpgds	Uncharacterized protein. (237 aa)
	mmachc	Methylmalonic aciduria and homocystinuria type C protein-like protein. (242 aa)
	slc1a2	Amino acid transporter. (352 aa)
	eef1g	Uncharacterized protein; Belongs to the GST superfamily. (682 aa)
	gclm	Uncharacterized protein. (277 aa)
	LOC103180885	Uncharacterized protein. (518 aa)
	gstz1	GST N-terminal domain-containing protein. (184 aa)
	LOC103177580	Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (246 aa)
	clic3	Chloride intracellular channel protein 4. (232 aa)
	chac2	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (184 aa)
	LOC103181811	Uncharacterized protein. (497 aa)
	mgst2	Microsomal glutathione S-transferase 2. (147 aa)
	LOC103183523	Uncharacterized protein. (390 aa)
	glo1	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. (182 aa)
	ctns	Uncharacterized protein. (373 aa)
	LOC103172667	Uncharacterized protein. (642 aa)
	gss	Glutathione synthetase. (475 aa)
	oplah	Hydantoinase_B domain-containing protein. (396 aa)
	gdap1	Ganglioside-induced differentiation-associated protein 1-like protein; Belongs to the GST superfamily. (361 aa)
	LOC103173721	Uncharacterized protein. (300 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gstp1	LOC103173721	ENSCMIP00000002657	ENSCMIP00000004048	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.719
Gstp1	LOC103174016	ENSCMIP00000002657	ENSCMIP00000006163	GST N-terminal domain-containing protein.	GST C-terminal domain-containing protein.	0.733
Gstp1	LOC103178998	ENSCMIP00000002657	ENSCMIP00000039310	GST N-terminal domain-containing protein.	Glutathione S-transferase 3-like protein.	0.958
Gstp1	LOC103179505	ENSCMIP00000002657	ENSCMIP00000041672	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.719
Gstp1	LOC103179940	ENSCMIP00000002657	ENSCMIP00000037136	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.715
Gstp1	LOC103182460	ENSCMIP00000002657	ENSCMIP00000038138	GST N-terminal domain-containing protein.	Glutathione S-transferase Mu 3; Belongs to the GST superfamily.	0.966
Gstp1	LOC103183976	ENSCMIP00000002657	ENSCMIP00000030304	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.719
Gstp1	LOC103184007	ENSCMIP00000002657	ENSCMIP00000033578	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.968
Gstp1	LOC103186674	ENSCMIP00000002657	ENSCMIP00000033012	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.540
Gstp1	LOC103188028	ENSCMIP00000002657	ENSCMIP00000035339	GST N-terminal domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.968
Gstp1	chac2	ENSCMIP00000002657	ENSCMIP00000007838	GST N-terminal domain-containing protein.	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.900
Gstp1	eef1g	ENSCMIP00000002657	ENSCMIP00000016052	GST N-terminal domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.543
Gstp1	gclc	ENSCMIP00000002657	ENSCMIP00000039652	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.558
Gstp1	ggt7	ENSCMIP00000002657	ENSCMIP00000038400	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.715
Gstp1	gsr	ENSCMIP00000002657	ENSCMIP00000037007	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.931
Gstp1	gss	ENSCMIP00000002657	ENSCMIP00000005210	GST N-terminal domain-containing protein.	Glutathione synthetase.	0.928
Gstp1	gstz1	ENSCMIP00000002657	ENSCMIP00000013622	GST N-terminal domain-containing protein.	GST N-terminal domain-containing protein.	0.733
Gstp1	hpgds	ENSCMIP00000002657	ENSCMIP00000024789	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.958
Gstp1	mgst2	ENSCMIP00000002657	ENSCMIP00000048210	GST N-terminal domain-containing protein.	Microsomal glutathione S-transferase 2.	0.920
LOC103172667	gss	ENSCMIP00000005402	ENSCMIP00000005210	Uncharacterized protein.	Glutathione synthetase.	0.442