99 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	homer3	WH1 domain-containing protein. (364 aa)
	cnrip1	Uncharacterized protein. (162 aa)
	yeats4	Uncharacterized protein. (284 aa)
	patj	Uncharacterized protein. (1907 aa)
	ENSCMIP00000047097	Uncharacterized protein. (90 aa)
	brca2	Tower domain-containing protein. (3025 aa)
	Synj2bp	Synaptojanin 2-binding protein. (61 aa)
	vps36	GLUE N-terminal domain-containing protein. (383 aa)
	LOC103181665	Uncharacterized protein; Belongs to the AAA ATPase family. (660 aa)
	sdcbp	Uncharacterized protein. (292 aa)
	Plekhb1	PH domain-containing protein. (98 aa)
	mpdz	Uncharacterized protein. (1999 aa)
	tax1bp3	PDZ domain-containing protein. (130 aa)
	shank2	Uncharacterized protein. (1820 aa)
	mki67	FHA domain-containing protein. (2952 aa)
	fn1	Uncharacterized protein. (2446 aa)
	sp1	Uncharacterized protein. (751 aa)
	ENSCMIP00000040893	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (317 aa)
	pex1	Uncharacterized protein. (1187 aa)
	foxn3	Fork-head domain-containing protein. (494 aa)
	LOC103179462	Uncharacterized protein. (346 aa)
	tnfaip3	Uncharacterized protein. (847 aa)
	xrcc5	Ku domain-containing protein. (772 aa)
	pxk	PX domain-containing protein kinase-like protein. (571 aa)
	rad51	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (337 aa)
	top2b	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1747 aa)
	snf8	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
	sdc1	4.1m domain-containing protein. (331 aa)
	ift46	Uncharacterized protein. (320 aa)
	ift52	Intraflagellar transport protein 52-like protein. (440 aa)
	plekhb2	PH domain-containing protein. (221 aa)
	fbln5	Uncharacterized protein. (459 aa)
	atxn1	AXH domain-containing protein. (780 aa)
	ENSCMIP00000028338	Homeobox domain-containing protein. (125 aa)
	cep120	Uncharacterized protein. (1017 aa)
	ENSCMIP00000027775	CENP-F_N domain-containing protein. (79 aa)
	cenpf	Uncharacterized protein. (1479 aa)
	neil1	Neil1-DNA_bind domain-containing protein. (241 aa)
	ENSCMIP00000027576	FPG_CAT domain-containing protein. (164 aa)
	pdzd11	PDZ domain-containing protein. (177 aa)
	grip1	Uncharacterized protein. (1275 aa)
	gpsm2	Uncharacterized protein. (649 aa)
	itgb3bp	Uncharacterized protein. (211 aa)
	prdx3	Thioredoxin domain-containing protein. (250 aa)
	ccn2	Connective tissue growth factor-like protein. (346 aa)
	lmo7	Uncharacterized protein. (1885 aa)
	usp7	Uncharacterized protein; Belongs to the peptidase C19 family. (1132 aa)
	ENSCMIP00000020143	NACHT domain-containing protein. (787 aa)
	ENSCMIP00000020011	HORMA domain-containing protein. (148 aa)
	npat	LisH domain-containing protein. (1519 aa)
	phb	Prohibitin. (273 aa)
	ercc4	ERCC4 domain-containing protein. (939 aa)
	LOC103190991	DTHCT domain-containing protein. (504 aa)
	sash1	Uncharacterized protein. (1223 aa)
	xrcc4	Uncharacterized protein. (345 aa)
	ercc3	Uncharacterized protein. (783 aa)
	numa1	Uncharacterized protein. (2101 aa)
	ENSCMIP00000015767	SKICH domain-containing protein. (81 aa)
	calcoco1	CALCOCO1 domain-containing protein. (431 aa)
	ENSCMIP00000015750	Zn-C2H2_12 domain-containing protein. (120 aa)
	ENSCMIP00000015460	Uncharacterized protein. (298 aa)
	ENSCMIP00000015308	PDZ domain-containing protein. (181 aa)
	vps4b	Uncharacterized protein; Belongs to the AAA ATPase family. (449 aa)
	atxn2	LsmAD domain-containing protein. (1069 aa)
	arl6ip5	PRA1 family protein. (189 aa)
	ENSCMIP00000013697	BRCT domain-containing protein. (211 aa)
	Paxip1	BRCT domain-containing protein. (327 aa)
	vgll2	Uncharacterized protein. (295 aa)
	ep300	Uncharacterized protein. (2325 aa)
	lig4	DNA ligase. (914 aa)
	pick1	AH domain-containing protein. (373 aa)
	LOC103191468	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1181 aa)
	xrcc6	Uncharacterized protein. (667 aa)
	ENSCMIP00000009663	SAM domain-containing protein. (286 aa)
	ENSCMIP00000009202	FHA domain-containing protein. (94 aa)
	hesx1	Homeobox domain-containing protein. (185 aa)
	pex10	RING-type domain-containing protein. (283 aa)
	map2k7	Protein kinase domain-containing protein. (170 aa)
	taf13	Uncharacterized protein. (133 aa)
	msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (935 aa)
	ercc6	Uncharacterized protein. (1546 aa)
	LOC103172205	PID domain-containing protein. (112 aa)
	catspere	Uncharacterized protein. (725 aa)
	coil	Coilin_N domain-containing protein. (577 aa)
	mcam	Uncharacterized protein. (99 aa)
	ENSCMIP00000006207	ANK_REP_REGION domain-containing protein. (169 aa)
	mad2l1	HORMA domain-containing protein. (227 aa)
	hspg2	Uncharacterized protein. (3602 aa)
	LOC103172636	Uncharacterized protein. (430 aa)
	sae1	ThiF domain-containing protein. (350 aa)
	ENSCMIP00000002845	Uncharacterized protein. (147 aa)
	LOC103174263	Uncharacterized protein. (177 aa)
	LOC103174237	HELICc2 domain-containing protein. (108 aa)
	vps4a	Uncharacterized protein; Belongs to the AAA ATPase family. (475 aa)
	sirt1	Deacetylase sirtuin-type domain-containing protein. (631 aa)
	pex16	Peroxisomal membrane protein PEX16. (220 aa)
	sclt1	Sodium channel and clathrin linker 1-like protein. (690 aa)
	pex26	Uncharacterized protein. (286 aa)
	dab2	Uncharacterized protein. (374 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002845	LOC103174237	ENSCMIP00000002845	ENSCMIP00000001786	Uncharacterized protein.	HELICc2 domain-containing protein.	0.862
ENSCMIP00000002845	brca2	ENSCMIP00000002845	ENSCMIP00000046776	Uncharacterized protein.	Tower domain-containing protein.	0.589
ENSCMIP00000002845	ercc3	ENSCMIP00000002845	ENSCMIP00000016348	Uncharacterized protein.	Uncharacterized protein.	0.862
ENSCMIP00000002845	ercc4	ENSCMIP00000002845	ENSCMIP00000019357	Uncharacterized protein.	ERCC4 domain-containing protein.	0.999
ENSCMIP00000002845	ercc6	ENSCMIP00000002845	ENSCMIP00000006870	Uncharacterized protein.	Uncharacterized protein.	0.676
ENSCMIP00000002845	lig4	ENSCMIP00000002845	ENSCMIP00000010015	Uncharacterized protein.	DNA ligase.	0.653
ENSCMIP00000002845	msh2	ENSCMIP00000002845	ENSCMIP00000007991	Uncharacterized protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.842
ENSCMIP00000002845	rad51	ENSCMIP00000002845	ENSCMIP00000038027	Uncharacterized protein.	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.733
ENSCMIP00000002845	xrcc5	ENSCMIP00000002845	ENSCMIP00000038307	Uncharacterized protein.	Ku domain-containing protein.	0.651
ENSCMIP00000002845	xrcc6	ENSCMIP00000002845	ENSCMIP00000009666	Uncharacterized protein.	Uncharacterized protein.	0.649
ENSCMIP00000006207	ENSCMIP00000009663	ENSCMIP00000006207	ENSCMIP00000009663	ANK_REP_REGION domain-containing protein.	SAM domain-containing protein.	0.908
ENSCMIP00000006207	homer3	ENSCMIP00000006207	ENSCMIP00000012058	ANK_REP_REGION domain-containing protein.	WH1 domain-containing protein.	0.576
ENSCMIP00000006207	ift52	ENSCMIP00000006207	ENSCMIP00000036285	ANK_REP_REGION domain-containing protein.	Intraflagellar transport protein 52-like protein.	0.404
ENSCMIP00000009202	ercc4	ENSCMIP00000009202	ENSCMIP00000019357	FHA domain-containing protein.	ERCC4 domain-containing protein.	0.528
ENSCMIP00000009202	rad51	ENSCMIP00000009202	ENSCMIP00000038027	FHA domain-containing protein.	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.704
ENSCMIP00000009202	xrcc5	ENSCMIP00000009202	ENSCMIP00000038307	FHA domain-containing protein.	Ku domain-containing protein.	0.673
ENSCMIP00000009202	xrcc6	ENSCMIP00000009202	ENSCMIP00000009666	FHA domain-containing protein.	Uncharacterized protein.	0.622
ENSCMIP00000009663	ENSCMIP00000006207	ENSCMIP00000009663	ENSCMIP00000006207	SAM domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.908
ENSCMIP00000009663	homer3	ENSCMIP00000009663	ENSCMIP00000012058	SAM domain-containing protein.	WH1 domain-containing protein.	0.576
ENSCMIP00000009663	ift52	ENSCMIP00000009663	ENSCMIP00000036285	SAM domain-containing protein.	Intraflagellar transport protein 52-like protein.	0.404