117 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab32	Ras-related protein Rab-32-like protein. (212 aa)
	LOC103176320	Uncharacterized protein. (907 aa)
	nod1	Uncharacterized protein. (862 aa)
	LOC103181886	TIR domain-containing protein; Belongs to the Toll-like receptor family. (827 aa)
	rab7a	Uncharacterized protein. (247 aa)
	inpp5b	Rho-GAP domain-containing protein. (861 aa)
	rab5a	Ras-related protein Rab-5A-like protein. (216 aa)
	cltc	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1687 aa)
	cdc42ep4	CRIB domain-containing protein. (329 aa)
	Rab11a	Uncharacterized protein. (239 aa)
	rin2	Uncharacterized protein. (891 aa)
	stx8	t-SNARE coiled-coil homology domain-containing protein. (313 aa)
	ENSCMIP00000043372	TIR domain-containing protein; Belongs to the Toll-like receptor family. (827 aa)
	rabgef1	Rab5 GDP/GTP exchange factor-like protein. (486 aa)
	LOC103180702	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (332 aa)
	stx12	Syntaxin-12; Belongs to the syntaxin family. (272 aa)
	rab23	Ras-related protein Rab-23-like protein. (233 aa)
	stam2	Uncharacterized protein. (531 aa)
	unc93b1	Uncharacterized protein. (594 aa)
	LOC103184088	VPS9 domain-containing protein. (449 aa)
	LOC103190051	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (540 aa)
	vps11	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (933 aa)
	rab22a	Uncharacterized protein. (194 aa)
	rab5b	Ras-related protein Rab-5B-like protein. (215 aa)
	amn	Protein amnionless-like protein. (483 aa)
	LOC103189527	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...] (951 aa)
	lamp2	Uncharacterized protein. (407 aa)
	cltcl1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1678 aa)
	pikfyve	Uncharacterized protein. (2140 aa)
	ap2m1	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (453 aa)
	rab38	Uncharacterized protein. (212 aa)
	rab14	Uncharacterized protein. (231 aa)
	vps9d1	VPS9 domain-containing protein. (675 aa)
	rab20	Uncharacterized protein. (228 aa)
	LOC103190481	Uncharacterized protein. (211 aa)
	ENSCMIP00000031434	FIP-RBD domain-containing protein. (74 aa)
	Rab11fip5	Uncharacterized protein. (1191 aa)
	sh3d21	Uncharacterized protein. (457 aa)
	pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (889 aa)
	Arf6	Uncharacterized protein. (156 aa)
	lmbrd1	Uncharacterized protein. (548 aa)
	LOC103182902	Muscle RAS oncogene-like protein. (213 aa)
	LOC103180999	Uncharacterized protein. (224 aa)
	syt7	Uncharacterized protein. (407 aa)
	ap2s1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (159 aa)
	ENSCMIP00000026962	TIR domain-containing protein; Belongs to the Toll-like receptor family. (839 aa)
	rabep1	Uncharacterized protein. (869 aa)
	lamp1	Lysosome-associated membrane glycoprotein 1-like protein. (438 aa)
	rab8a	Uncharacterized protein. (233 aa)
	sh3kbp1	Uncharacterized protein. (647 aa)
	cd2ap	Uncharacterized protein. (746 aa)
	Tmem55a	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (184 aa)
	vamp8	V-SNARE coiled-coil homology domain-containing protein. (105 aa)
	rab15	Uncharacterized protein. (211 aa)
	LOC103177485	Uncharacterized protein; Belongs to the CD36 family. (490 aa)
	stxbp3	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (601 aa)
	lpar1	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (345 aa)
	tyrp1	Uncharacterized protein. (588 aa)
	LOC103187144	Uncharacterized protein. (1970 aa)
	stx7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (265 aa)
	rab9a	Ras-related protein Rab-9A-like protein. (201 aa)
	LOC103185499	TIR domain-containing protein. (799 aa)
	ENSCMIP00000021858	TIR domain-containing protein. (780 aa)
	rab11b	Uncharacterized protein. (226 aa)
	rapgef2	Uncharacterized protein. (1696 aa)
	rab39a	Uncharacterized protein. (241 aa)
	LOC103179324	Uncharacterized protein. (672 aa)
	atg14	Uncharacterized protein. (500 aa)
	Cdc42ep2	CRIB domain-containing protein. (213 aa)
	ENSCMIP00000001791	Uncharacterized protein. (109 aa)
	ENSCMIP00000001851	Uncharacterized protein. (59 aa)
	heatr5b	Uncharacterized protein. (2071 aa)
	LOC103171936	RH2 domain-containing protein. (322 aa)
	ENSCMIP00000002873	Uncharacterized protein. (241 aa)
	rab7b	Uncharacterized protein. (200 aa)
	ENSCMIP00000003476	Uncharacterized protein. (134 aa)
	ENSCMIP00000003507	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (166 aa)
	ENSCMIP00000004232	Uncharacterized protein. (144 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2532 aa)
	heatr5a	Uncharacterized protein. (2049 aa)
	LOC103172755	Uncharacterized protein. (161 aa)
	rab5c	Ras-related protein Rab-5C. (216 aa)
	gapvd1	Uncharacterized protein. (1340 aa)
	LOC103177980	TIR domain-containing protein. (1033 aa)
	rin3	Uncharacterized protein. (995 aa)
	ENSCMIP00000007996	Uncharacterized protein. (491 aa)
	LOC103172954	SAC domain-containing protein. (210 aa)
	LOC103172964	Uncharacterized protein. (233 aa)
	stx6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (287 aa)
	myo6	Myosin-VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1286 aa)
	vamp7	Uncharacterized protein; Belongs to the synaptobrevin family. (228 aa)
	tirap	TIR domain-containing protein. (224 aa)
	LOC103172448	HSac2 domain-containing protein. (245 aa)
	ehd2	EH-domain-containing 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (536 aa)
	inpp5f	Uncharacterized protein. (1122 aa)
	vamp3	V-SNARE coiled-coil homology domain-containing protein. (124 aa)
	appl1	PID domain-containing protein. (680 aa)
	LOC103172558	Uncharacterized protein. (242 aa)
	ENSCMIP00000010050	Uncharacterized protein. (220 aa)
	igf2r	Fibronectin type-II domain-containing protein. (1361 aa)
	LOC103176829	IGv domain-containing protein. (230 aa)
	ocrl	Rho-GAP domain-containing protein. (908 aa)
	LOC103179218	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (176 aa)
	rab10	Ras-related protein Rab-10-like protein. (200 aa)
	rapgef6	Uncharacterized protein. (1578 aa)
	rab35	Uncharacterized protein. (206 aa)
	slc18a3	MFS domain-containing protein. (484 aa)
	scarb2	Uncharacterized protein; Belongs to the CD36 family. (489 aa)
	LOC103189744	SAC domain-containing protein. (103 aa)
	ENSCMIP00000013487	TIR domain-containing protein. (816 aa)
	rab8b	Uncharacterized protein. (250 aa)
	LOC103187631	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (553 aa)
	appl2	Uncharacterized protein. (637 aa)
	ENSCMIP00000018155	Uncharacterized protein. (145 aa)
	ambra1	WD_REPEATS_REGION domain-containing protein. (1336 aa)
	rab11fip3	FIP-RBD domain-containing protein. (585 aa)
	ENSCMIP00000019902	Uncharacterized protein. (382 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arf6	ENSCMIP00000001791	ENSCMIP00000030532	ENSCMIP00000001791	Uncharacterized protein.	Uncharacterized protein.	0.421
Arf6	LOC103172755	ENSCMIP00000030532	ENSCMIP00000006822	Uncharacterized protein.	Uncharacterized protein.	0.421
Arf6	LOC103179218	ENSCMIP00000030532	ENSCMIP00000011328	Uncharacterized protein.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.902
Arf6	Rab11a	ENSCMIP00000030532	ENSCMIP00000045166	Uncharacterized protein.	Uncharacterized protein.	0.410
Arf6	appl1	ENSCMIP00000030532	ENSCMIP00000009492	Uncharacterized protein.	PID domain-containing protein.	0.444
Arf6	appl2	ENSCMIP00000030532	ENSCMIP00000016988	Uncharacterized protein.	Uncharacterized protein.	0.444
Arf6	cltc	ENSCMIP00000030532	ENSCMIP00000045968	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.424
Arf6	cltcl1	ENSCMIP00000030532	ENSCMIP00000033221	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.424
Arf6	pikfyve	ENSCMIP00000030532	ENSCMIP00000033045	Uncharacterized protein.	Uncharacterized protein.	0.400
Arf6	rab11b	ENSCMIP00000030532	ENSCMIP00000021058	Uncharacterized protein.	Uncharacterized protein.	0.410
Arf6	rab11fip3	ENSCMIP00000030532	ENSCMIP00000019084	Uncharacterized protein.	FIP-RBD domain-containing protein.	0.421
Cdc42ep2	cdc42ep4	ENSCMIP00000001486	ENSCMIP00000045661	CRIB domain-containing protein.	CRIB domain-containing protein.	0.586
ENSCMIP00000001791	Arf6	ENSCMIP00000001791	ENSCMIP00000030532	Uncharacterized protein.	Uncharacterized protein.	0.421
ENSCMIP00000001791	LOC103179218	ENSCMIP00000001791	ENSCMIP00000011328	Uncharacterized protein.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.421
ENSCMIP00000001791	Rab11a	ENSCMIP00000001791	ENSCMIP00000045166	Uncharacterized protein.	Uncharacterized protein.	0.817
ENSCMIP00000001791	rab11b	ENSCMIP00000001791	ENSCMIP00000021058	Uncharacterized protein.	Uncharacterized protein.	0.817
ENSCMIP00000001851	Rab11a	ENSCMIP00000001851	ENSCMIP00000045166	Uncharacterized protein.	Uncharacterized protein.	0.482
ENSCMIP00000001851	rab11b	ENSCMIP00000001851	ENSCMIP00000021058	Uncharacterized protein.	Uncharacterized protein.	0.482
ENSCMIP00000002873	ENSCMIP00000003476	ENSCMIP00000002873	ENSCMIP00000003476	Uncharacterized protein.	Uncharacterized protein.	0.465
ENSCMIP00000002873	appl1	ENSCMIP00000002873	ENSCMIP00000009492	Uncharacterized protein.	PID domain-containing protein.	0.440