9 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	urm1	Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically [...] (102 aa)
	sumo2	Small ubiquitin-related modifier. (113 aa)
	Ubc	Ubiquitin-like domain-containing protein. (97 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	uba52	Ribosomal protein L40-like isoform 1. (128 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	rps27a	Ubiquitin-like domain-containing protein. (159 aa)
	atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (112 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103183812	LOC103186049	ENSCMIP00000018808	ENSCMIP00000018701	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103183812	Ubc	ENSCMIP00000018808	ENSCMIP00000028897	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.662
LOC103183812	rps27a	ENSCMIP00000018808	ENSCMIP00000006356	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.652
LOC103183812	sumo2	ENSCMIP00000018808	ENSCMIP00000001390	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.658
LOC103183812	uba52	ENSCMIP00000018808	ENSCMIP00000012025	Small ubiquitin-related modifier.	Ribosomal protein L40-like isoform 1.	0.716
LOC103186049	LOC103183812	ENSCMIP00000018701	ENSCMIP00000018808	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103186049	Ubc	ENSCMIP00000018701	ENSCMIP00000028897	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.757
LOC103186049	rps27a	ENSCMIP00000018701	ENSCMIP00000006356	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.715
LOC103186049	sumo1	ENSCMIP00000018701	ENSCMIP00000011551	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103186049	uba52	ENSCMIP00000018701	ENSCMIP00000012025	Small ubiquitin-related modifier.	Ribosomal protein L40-like isoform 1.	0.744
Ubc	LOC103183812	ENSCMIP00000028897	ENSCMIP00000018808	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.662
Ubc	LOC103186049	ENSCMIP00000028897	ENSCMIP00000018701	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.757
Ubc	atg12	ENSCMIP00000028897	ENSCMIP00000001695	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.563
Ubc	rps27a	ENSCMIP00000028897	ENSCMIP00000006356	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.994
Ubc	sumo1	ENSCMIP00000028897	ENSCMIP00000011551	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.662
Ubc	sumo2	ENSCMIP00000028897	ENSCMIP00000001390	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.757
Ubc	uba52	ENSCMIP00000028897	ENSCMIP00000012025	Ubiquitin-like domain-containing protein.	Ribosomal protein L40-like isoform 1.	0.999
atg12	Ubc	ENSCMIP00000001695	ENSCMIP00000028897	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Ubiquitin-like domain-containing protein.	0.563
rps27a	LOC103183812	ENSCMIP00000006356	ENSCMIP00000018808	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.652
rps27a	LOC103186049	ENSCMIP00000006356	ENSCMIP00000018701	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.715