9 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ogg1	ENDO3c domain-containing protein. (450 aa)
	ercc3	Uncharacterized protein. (783 aa)
	LOC103177579	Uncharacterized protein. (1175 aa)
	LOC103174237	HELICc2 domain-containing protein. (108 aa)
	ENSCMIP00000002845	Uncharacterized protein. (147 aa)
	xpa	DNA repair protein complementing XP-A cells-like protein. (226 aa)
	NTHL1	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (296 aa)
	ercc4	ERCC4 domain-containing protein. (939 aa)
	ENSCMIP00000011378	Uncharacterized protein. (505 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002845	ENSCMIP00000011378	ENSCMIP00000002845	ENSCMIP00000011378	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSCMIP00000002845	LOC103174237	ENSCMIP00000002845	ENSCMIP00000001786	Uncharacterized protein.	HELICc2 domain-containing protein.	0.862
ENSCMIP00000002845	LOC103177579	ENSCMIP00000002845	ENSCMIP00000011340	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSCMIP00000002845	NTHL1	ENSCMIP00000002845	ENSCMIP00000021962	Uncharacterized protein.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.602
ENSCMIP00000002845	ercc3	ENSCMIP00000002845	ENSCMIP00000016348	Uncharacterized protein.	Uncharacterized protein.	0.862
ENSCMIP00000002845	ercc4	ENSCMIP00000002845	ENSCMIP00000019357	Uncharacterized protein.	ERCC4 domain-containing protein.	0.999
ENSCMIP00000002845	ogg1	ENSCMIP00000002845	ENSCMIP00000042754	Uncharacterized protein.	ENDO3c domain-containing protein.	0.654
ENSCMIP00000002845	xpa	ENSCMIP00000002845	ENSCMIP00000016243	Uncharacterized protein.	DNA repair protein complementing XP-A cells-like protein.	0.985
ENSCMIP00000011378	ENSCMIP00000002845	ENSCMIP00000011378	ENSCMIP00000002845	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSCMIP00000011378	LOC103174237	ENSCMIP00000011378	ENSCMIP00000001786	Uncharacterized protein.	HELICc2 domain-containing protein.	0.921
ENSCMIP00000011378	LOC103177579	ENSCMIP00000011378	ENSCMIP00000011340	Uncharacterized protein.	Uncharacterized protein.	0.888
ENSCMIP00000011378	NTHL1	ENSCMIP00000011378	ENSCMIP00000021962	Uncharacterized protein.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.584
ENSCMIP00000011378	ercc3	ENSCMIP00000011378	ENSCMIP00000016348	Uncharacterized protein.	Uncharacterized protein.	0.939
ENSCMIP00000011378	ercc4	ENSCMIP00000011378	ENSCMIP00000019357	Uncharacterized protein.	ERCC4 domain-containing protein.	0.877
ENSCMIP00000011378	ogg1	ENSCMIP00000011378	ENSCMIP00000042754	Uncharacterized protein.	ENDO3c domain-containing protein.	0.484
ENSCMIP00000011378	xpa	ENSCMIP00000011378	ENSCMIP00000016243	Uncharacterized protein.	DNA repair protein complementing XP-A cells-like protein.	0.817
LOC103174237	ENSCMIP00000002845	ENSCMIP00000001786	ENSCMIP00000002845	HELICc2 domain-containing protein.	Uncharacterized protein.	0.862
LOC103174237	ENSCMIP00000011378	ENSCMIP00000001786	ENSCMIP00000011378	HELICc2 domain-containing protein.	Uncharacterized protein.	0.921
LOC103174237	LOC103177579	ENSCMIP00000001786	ENSCMIP00000011340	HELICc2 domain-containing protein.	Uncharacterized protein.	0.921
LOC103174237	NTHL1	ENSCMIP00000001786	ENSCMIP00000021962	HELICc2 domain-containing protein.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.505