7 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vac14	Uncharacterized protein. (770 aa)
	nrbf2	Nuclear receptor-binding factor 2. (297 aa)
	atg14	Uncharacterized protein. (500 aa)
	pik3r4	Uncharacterized protein. (1371 aa)
	ENSCMIP00000018155	Uncharacterized protein. (145 aa)
	becn1	Uncharacterized protein. (451 aa)
	pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (889 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000018155	atg14	ENSCMIP00000018155	ENSCMIP00000000340	Uncharacterized protein.	Uncharacterized protein.	0.668
ENSCMIP00000018155	becn1	ENSCMIP00000018155	ENSCMIP00000018475	Uncharacterized protein.	Uncharacterized protein.	0.997
ENSCMIP00000018155	nrbf2	ENSCMIP00000018155	ENSCMIP00000047687	Uncharacterized protein.	Nuclear receptor-binding factor 2.	0.603
ENSCMIP00000018155	pik3c3	ENSCMIP00000018155	ENSCMIP00000030933	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.997
ENSCMIP00000018155	pik3r4	ENSCMIP00000018155	ENSCMIP00000000912	Uncharacterized protein.	Uncharacterized protein.	0.997
atg14	ENSCMIP00000018155	ENSCMIP00000000340	ENSCMIP00000018155	Uncharacterized protein.	Uncharacterized protein.	0.668
atg14	becn1	ENSCMIP00000000340	ENSCMIP00000018475	Uncharacterized protein.	Uncharacterized protein.	0.998
atg14	nrbf2	ENSCMIP00000000340	ENSCMIP00000047687	Uncharacterized protein.	Nuclear receptor-binding factor 2.	0.997
atg14	pik3c3	ENSCMIP00000000340	ENSCMIP00000030933	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
atg14	pik3r4	ENSCMIP00000000340	ENSCMIP00000000912	Uncharacterized protein.	Uncharacterized protein.	0.998
becn1	ENSCMIP00000018155	ENSCMIP00000018475	ENSCMIP00000018155	Uncharacterized protein.	Uncharacterized protein.	0.997
becn1	atg14	ENSCMIP00000018475	ENSCMIP00000000340	Uncharacterized protein.	Uncharacterized protein.	0.998
becn1	nrbf2	ENSCMIP00000018475	ENSCMIP00000047687	Uncharacterized protein.	Nuclear receptor-binding factor 2.	0.948
becn1	pik3c3	ENSCMIP00000018475	ENSCMIP00000030933	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
becn1	pik3r4	ENSCMIP00000018475	ENSCMIP00000000912	Uncharacterized protein.	Uncharacterized protein.	0.999
nrbf2	ENSCMIP00000018155	ENSCMIP00000047687	ENSCMIP00000018155	Nuclear receptor-binding factor 2.	Uncharacterized protein.	0.603
nrbf2	atg14	ENSCMIP00000047687	ENSCMIP00000000340	Nuclear receptor-binding factor 2.	Uncharacterized protein.	0.997
nrbf2	becn1	ENSCMIP00000047687	ENSCMIP00000018475	Nuclear receptor-binding factor 2.	Uncharacterized protein.	0.948
nrbf2	pik3c3	ENSCMIP00000047687	ENSCMIP00000030933	Nuclear receptor-binding factor 2.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.997
nrbf2	pik3r4	ENSCMIP00000047687	ENSCMIP00000000912	Nuclear receptor-binding factor 2.	Uncharacterized protein.	0.973