(26 nodes) Bromodomain, conserved site network (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	brwd1	Uncharacterized protein. (1402 aa)
	brpf3	Uncharacterized protein. (1219 aa)
	ENSCMIP00000017474	Uncharacterized protein. (667 aa)
	pbrm1	Uncharacterized protein. (1659 aa)
	smarca2	Uncharacterized protein. (1544 aa)
	bptf	Uncharacterized protein. (2794 aa)
	kat2b	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (803 aa)
	LOC103175037	Bromo domain-containing protein. (1398 aa)
	brd7	Bromo domain-containing protein. (657 aa)
	brpf1	Uncharacterized protein. (1237 aa)
	atad2b	Bromo domain-containing protein. (1443 aa)
	taf1	Transcription initiation factor TFIID subunit. (2000 aa)
	cecr2	Bromo domain-containing protein. (1478 aa)
	phip	Uncharacterized protein. (1757 aa)
	baz1b	Uncharacterized protein. (1573 aa)
	brd3	Uncharacterized protein. (751 aa)
	ENSCMIP00000035176	Uncharacterized protein. (408 aa)
	brd1	Uncharacterized protein. (1207 aa)
	kat2a	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (794 aa)
	ep300	Uncharacterized protein. (2325 aa)
	baz2b	Uncharacterized protein. (2100 aa)
	brwd3	Uncharacterized protein. (1770 aa)
	ENSCMIP00000016251	Uncharacterized protein. (707 aa)
	crebbp	Uncharacterized protein. (2452 aa)
	smarca4	Uncharacterized protein. (1578 aa)
	baz1a	Uncharacterized protein. (1646 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000016251	ep300	ENSCMIP00000016251	ENSCMIP00000011493	Uncharacterized protein.	Uncharacterized protein.	0.488
ENSCMIP00000016251	taf1	ENSCMIP00000016251	ENSCMIP00000020571	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.534
ENSCMIP00000017474	ep300	ENSCMIP00000017474	ENSCMIP00000011493	Uncharacterized protein.	Uncharacterized protein.	0.488
ENSCMIP00000017474	taf1	ENSCMIP00000017474	ENSCMIP00000020571	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.534
LOC103175037	baz1a	ENSCMIP00000043381	ENSCMIP00000004506	Bromo domain-containing protein.	Uncharacterized protein.	0.475
LOC103175037	baz1b	ENSCMIP00000043381	ENSCMIP00000026790	Bromo domain-containing protein.	Uncharacterized protein.	0.402
LOC103175037	cecr2	ENSCMIP00000043381	ENSCMIP00000024930	Bromo domain-containing protein.	Bromo domain-containing protein.	0.458
LOC103175037	crebbp	ENSCMIP00000043381	ENSCMIP00000016551	Bromo domain-containing protein.	Uncharacterized protein.	0.646
LOC103175037	ep300	ENSCMIP00000043381	ENSCMIP00000011493	Bromo domain-containing protein.	Uncharacterized protein.	0.646
baz1a	LOC103175037	ENSCMIP00000004506	ENSCMIP00000043381	Uncharacterized protein.	Bromo domain-containing protein.	0.475
baz1a	cecr2	ENSCMIP00000004506	ENSCMIP00000024930	Uncharacterized protein.	Bromo domain-containing protein.	0.475
baz1b	LOC103175037	ENSCMIP00000026790	ENSCMIP00000043381	Uncharacterized protein.	Bromo domain-containing protein.	0.402
baz1b	cecr2	ENSCMIP00000026790	ENSCMIP00000024930	Uncharacterized protein.	Bromo domain-containing protein.	0.423
baz1b	crebbp	ENSCMIP00000026790	ENSCMIP00000016551	Uncharacterized protein.	Uncharacterized protein.	0.559
baz1b	ep300	ENSCMIP00000026790	ENSCMIP00000011493	Uncharacterized protein.	Uncharacterized protein.	0.670
baz1b	kat2a	ENSCMIP00000026790	ENSCMIP00000007166	Uncharacterized protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.547
baz1b	kat2b	ENSCMIP00000026790	ENSCMIP00000046055	Uncharacterized protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.547
brd1	brd7	ENSCMIP00000037853	ENSCMIP00000041254	Uncharacterized protein.	Bromo domain-containing protein.	0.463
brd1	brpf3	ENSCMIP00000037853	ENSCMIP00000003277	Uncharacterized protein.	Uncharacterized protein.	0.586
brd1	ep300	ENSCMIP00000037853	ENSCMIP00000011493	Uncharacterized protein.	Uncharacterized protein.	0.400