42 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup42	Uncharacterized protein. (394 aa)
	recql4	Uncharacterized protein. (1406 aa)
	xpc	Uncharacterized protein. (956 aa)
	Kctd2	Uncharacterized protein. (63 aa)
	V9KPU8_CALMI	Centrosomal protein CEP192-like protein; Belongs to the WD repeat SEC13 family. (423 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (601 aa)
	cbx4	Uncharacterized protein. (493 aa)
	ENSCMIP00000046004	Uncharacterized protein. (408 aa)
	pias4	E3 SUMO-protein ligase PIAS4. (433 aa)
	rad21	Uncharacterized protein. (633 aa)
	ENSCMIP00000044115	BLM_N domain-containing protein. (350 aa)
	blm	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (972 aa)
	rnf2	RING-type domain-containing protein. (359 aa)
	meiob	Uncharacterized protein. (472 aa)
	sumo2	Small ubiquitin-related modifier. (113 aa)
	ENSCMIP00000005675	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (65 aa)
	LOC103190728	Uncharacterized protein. (213 aa)
	V9KU13_CALMI	DNA polymerase III polC-type-like protein. (243 aa)
	ENSCMIP00000006018	RING-type domain-containing protein. (448 aa)
	ENSCMIP00000007108	RING-type domain-containing protein. (351 aa)
	ENSCMIP00000010820	RING-type domain-containing protein. (68 aa)
	brca1	Uncharacterized protein. (1637 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	parp1	Poly [ADP-ribose] polymerase. (1035 aa)
	ube2i	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
	LOC103185428	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. (295 aa)
	LOC103185457	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. (299 aa)
	xrcc4	Uncharacterized protein. (345 aa)
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	tdg	UDG domain-containing protein. (409 aa)
	smc6	Structural maintenance of chromosomes protein 6. (1099 aa)
	scml2	Sex comb on midleg-like protein 2. (733 aa)
	smc5	AAA_23 domain-containing protein. (1049 aa)
	ENSCMIP00000023840	Uncharacterized protein. (259 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (921 aa)
	nsmce1	RING-type domain-containing protein. (317 aa)
	rnf168	RING-type domain-containing protein. (618 aa)
	pcgf2	RING-type domain-containing protein. (324 aa)
	nsmce2	SP-RING-type domain-containing protein. (252 aa)
	scmh1	Uncharacterized protein. (738 aa)
	cetn3	Uncharacterized protein. (196 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005675	Kctd2	ENSCMIP00000005675	ENSCMIP00000049169	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.588
ENSCMIP00000005675	LOC103183812	ENSCMIP00000005675	ENSCMIP00000018808	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Small ubiquitin-related modifier.	0.488
ENSCMIP00000005675	LOC103186049	ENSCMIP00000005675	ENSCMIP00000018701	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Small ubiquitin-related modifier.	0.497
ENSCMIP00000005675	nup107	ENSCMIP00000005675	ENSCMIP00000025531	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.974
ENSCMIP00000005675	nup42	ENSCMIP00000005675	ENSCMIP00000040450	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.696
ENSCMIP00000005675	sumo1	ENSCMIP00000005675	ENSCMIP00000011551	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Small ubiquitin-related modifier.	0.488
ENSCMIP00000005675	sumo2	ENSCMIP00000005675	ENSCMIP00000001390	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Small ubiquitin-related modifier.	0.497
ENSCMIP00000005675	ube2i	ENSCMIP00000005675	ENSCMIP00000014219	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.641
ENSCMIP00000005675	xrcc4	ENSCMIP00000005675	ENSCMIP00000016789	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.512
ENSCMIP00000006018	ENSCMIP00000023840	ENSCMIP00000006018	ENSCMIP00000023840	RING-type domain-containing protein.	Uncharacterized protein.	0.453
ENSCMIP00000006018	Kctd2	ENSCMIP00000006018	ENSCMIP00000049169	RING-type domain-containing protein.	Uncharacterized protein.	0.621
ENSCMIP00000006018	LOC103183812	ENSCMIP00000006018	ENSCMIP00000018808	RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.772
ENSCMIP00000006018	sumo1	ENSCMIP00000006018	ENSCMIP00000011551	RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.772
ENSCMIP00000006018	ube2i	ENSCMIP00000006018	ENSCMIP00000014219	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.811
ENSCMIP00000007108	ENSCMIP00000046004	ENSCMIP00000007108	ENSCMIP00000046004	RING-type domain-containing protein.	Uncharacterized protein.	0.817
ENSCMIP00000007108	Kctd2	ENSCMIP00000007108	ENSCMIP00000049169	RING-type domain-containing protein.	Uncharacterized protein.	0.503
ENSCMIP00000007108	LOC103186049	ENSCMIP00000007108	ENSCMIP00000018701	RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.423
ENSCMIP00000007108	cbx4	ENSCMIP00000007108	ENSCMIP00000046007	RING-type domain-containing protein.	Uncharacterized protein.	0.877
ENSCMIP00000007108	rnf2	ENSCMIP00000007108	ENSCMIP00000043786	RING-type domain-containing protein.	RING-type domain-containing protein.	0.964
ENSCMIP00000007108	scmh1	ENSCMIP00000007108	ENSCMIP00000038651	RING-type domain-containing protein.	Uncharacterized protein.	0.809