17 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	thrb	Uncharacterized protein. (473 aa)
	LOC103174112	PINIT domain-containing protein. (146 aa)
	sumo2	Small ubiquitin-related modifier. (113 aa)
	LOC103172751	Uncharacterized protein. (299 aa)
	LOC103172030	NR LBD domain-containing protein. (372 aa)
	ENSCMIP00000009361	NR LBD domain-containing protein. (228 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	nr3c1	Uncharacterized protein. (759 aa)
	ube2i	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
	pias2	Uncharacterized protein. (625 aa)
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	nr3c2	Uncharacterized protein. (971 aa)
	pgr	Uncharacterized protein. (425 aa)
	ar	Uncharacterized protein. (459 aa)
	pias4	E3 SUMO-protein ligase PIAS4. (433 aa)
	pias1	Uncharacterized protein. (660 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000009361	ube2i	ENSCMIP00000009361	ENSCMIP00000014219	NR LBD domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.438
LOC103172030	thrb	ENSCMIP00000004087	ENSCMIP00000037259	NR LBD domain-containing protein.	Uncharacterized protein.	0.901
LOC103172030	ube2i	ENSCMIP00000004087	ENSCMIP00000014219	NR LBD domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.407
LOC103172751	ube2i	ENSCMIP00000002494	ENSCMIP00000014219	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.438
LOC103174112	LOC103183812	ENSCMIP00000001054	ENSCMIP00000018808	PINIT domain-containing protein.	Small ubiquitin-related modifier.	0.798
LOC103174112	LOC103186049	ENSCMIP00000001054	ENSCMIP00000018701	PINIT domain-containing protein.	Small ubiquitin-related modifier.	0.800
LOC103174112	ar	ENSCMIP00000001054	ENSCMIP00000041410	PINIT domain-containing protein.	Uncharacterized protein.	0.451
LOC103174112	sumo1	ENSCMIP00000001054	ENSCMIP00000011551	PINIT domain-containing protein.	Small ubiquitin-related modifier.	0.798
LOC103174112	sumo2	ENSCMIP00000001054	ENSCMIP00000001390	PINIT domain-containing protein.	Small ubiquitin-related modifier.	0.800
LOC103174112	ube2i	ENSCMIP00000001054	ENSCMIP00000014219	PINIT domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.850
LOC103183812	LOC103174112	ENSCMIP00000018808	ENSCMIP00000001054	Small ubiquitin-related modifier.	PINIT domain-containing protein.	0.798
LOC103183812	LOC103186049	ENSCMIP00000018808	ENSCMIP00000018701	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103183812	ar	ENSCMIP00000018808	ENSCMIP00000041410	Small ubiquitin-related modifier.	Uncharacterized protein.	0.479
LOC103183812	nr3c2	ENSCMIP00000018808	ENSCMIP00000024057	Small ubiquitin-related modifier.	Uncharacterized protein.	0.429
LOC103183812	pgr	ENSCMIP00000018808	ENSCMIP00000027981	Small ubiquitin-related modifier.	Uncharacterized protein.	0.438
LOC103183812	pias1	ENSCMIP00000018808	ENSCMIP00000035358	Small ubiquitin-related modifier.	Uncharacterized protein.	0.798
LOC103183812	pias2	ENSCMIP00000018808	ENSCMIP00000017733	Small ubiquitin-related modifier.	Uncharacterized protein.	0.798
LOC103183812	pias4	ENSCMIP00000018808	ENSCMIP00000045483	Small ubiquitin-related modifier.	E3 SUMO-protein ligase PIAS4.	0.837
LOC103183812	sumo2	ENSCMIP00000018808	ENSCMIP00000001390	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.658
LOC103183812	ube2i	ENSCMIP00000018808	ENSCMIP00000014219	Small ubiquitin-related modifier.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.997