STRINGSTRING
nup88 nup88 LOC103174076 LOC103174076 nup85 nup85 sumo2 sumo2 ENSCMIP00000003111 ENSCMIP00000003111 ENSCMIP00000003575 ENSCMIP00000003575 ENSCMIP00000004389 ENSCMIP00000004389 ENSCMIP00000004983 ENSCMIP00000004983 ENSCMIP00000005675 ENSCMIP00000005675 LOC103172909 LOC103172909 LOC103172329 LOC103172329 LOC103191468 LOC103191468 rangap1 rangap1 sumo1 sumo1 nup54 nup54 ube2i ube2i ENSCMIP00000016713 ENSCMIP00000016713 nup153 nup153 nup133 nup133 nup43 nup43 LOC103186049 LOC103186049 LOC103183812 LOC103183812 LOC103190991 LOC103190991 nup58 nup58 nup107 nup107 nup210 nup210 nup37 nup37 incenp incenp ndc1 ndc1 LOC103180519 LOC103180519 nup93 nup93 top1mt top1mt ENSCMIP00000028583 ENSCMIP00000028583 nup210l nup210l nup160 nup160 nup205 nup205 nup98 nup98 nup50 nup50 nup188 nup188 nup35 nup35 rae1 rae1 top1 top1 top2b top2b ranbp2 ranbp2 ENSCMIP00000038913 ENSCMIP00000038913 nup42 nup42 aaas aaas tpr tpr pias4 pias4 cdca8 cdca8 V9KPU8_CALMI V9KPU8_CALMI birc5 birc5 Kctd2 Kctd2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nup88Uncharacterized protein. (713 aa)
LOC103174076Nucleoporin_C domain-containing protein. (221 aa)
nup85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (701 aa)
sumo2Small ubiquitin-related modifier. (113 aa)
ENSCMIP00000003111Nucleoporin_N domain-containing protein. (72 aa)
ENSCMIP00000003575Uncharacterized protein. (70 aa)
ENSCMIP00000004389PCNA_N domain-containing protein. (75 aa)
ENSCMIP00000004983Uncharacterized protein. (167 aa)
ENSCMIP00000005675WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (65 aa)
LOC103172909Nucleoporin_N domain-containing protein. (185 aa)
LOC103172329Nsp1_C domain-containing protein. (440 aa)
LOC103191468DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1181 aa)
rangap1RanGAP1_C domain-containing protein. (521 aa)
sumo1Small ubiquitin-related modifier. (111 aa)
nup54Nucleoporin p54-like protein. (519 aa)
ube2iUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
ENSCMIP00000016713Uncharacterized protein. (295 aa)
nup153Uncharacterized protein. (1362 aa)
nup133Uncharacterized protein. (1149 aa)
nup43WD_REPEATS_REGION domain-containing protein. (335 aa)
LOC103186049Small ubiquitin-related modifier. (124 aa)
LOC103183812Small ubiquitin-related modifier. (107 aa)
LOC103190991DTHCT domain-containing protein. (504 aa)
nup58Nucleoporin p58/p45-like protein. (584 aa)
nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (921 aa)
nup210Uncharacterized protein. (1869 aa)
nup37WD_REPEATS_REGION domain-containing protein. (351 aa)
incenpInner centromere protein. (932 aa)
ndc1Uncharacterized protein. (675 aa)
LOC103180519Uncharacterized protein. (1057 aa)
nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (848 aa)
top1mtDNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (609 aa)
ENSCMIP00000028583Uncharacterized protein. (122 aa)
nup210lBIG2 domain-containing protein. (1828 aa)
nup160Uncharacterized protein. (1444 aa)
nup205Uncharacterized protein. (2025 aa)
nup98Peptidase S59 domain-containing protein. (1759 aa)
nup50Nuclear pore complex protein Nup50. (475 aa)
nup188Uncharacterized protein. (1708 aa)
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (345 aa)
rae1WD_REPEATS_REGION domain-containing protein. (368 aa)
top1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (760 aa)
top2bDNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1747 aa)
ranbp2Uncharacterized protein. (3000 aa)
ENSCMIP00000038913Nup214_FG domain-containing protein. (1652 aa)
nup42Uncharacterized protein. (394 aa)
aaasWD_REPEATS_REGION domain-containing protein. (542 aa)
tprTPR_MLP1_2 domain-containing protein. (2394 aa)
pias4E3 SUMO-protein ligase PIAS4. (433 aa)
cdca8Nbl1_Borealin_N domain-containing protein. (283 aa)
V9KPU8_CALMICentrosomal protein CEP192-like protein; Belongs to the WD repeat SEC13 family. (423 aa)
birc5Uncharacterized protein. (164 aa)
Kctd2Uncharacterized protein. (63 aa)
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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