14 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dpep1	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (392 aa)
	LOC103179940	Uncharacterized protein. (611 aa)
	LOC103176036	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (429 aa)
	ggt7	Uncharacterized protein. (738 aa)
	LOC103179505	Uncharacterized protein. (549 aa)
	dpep2	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (435 aa)
	mgst2	Microsomal glutathione S-transferase 2. (147 aa)
	mgst3	Uncharacterized protein. (160 aa)
	acy1	M20_dimer domain-containing protein. (449 aa)
	LOC103173721	Uncharacterized protein. (300 aa)
	LOC103181391	Aldo_ket_red domain-containing protein. (260 aa)
	mgst1	Uncharacterized protein. (115 aa)
	LOC103183976	Uncharacterized protein. (558 aa)
	LOC103185642	Uncharacterized protein. (112 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173721	LOC103179505	ENSCMIP00000004048	ENSCMIP00000041672	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC103173721	LOC103179940	ENSCMIP00000004048	ENSCMIP00000037136	Uncharacterized protein.	Uncharacterized protein.	0.848
LOC103173721	LOC103183976	ENSCMIP00000004048	ENSCMIP00000030304	Uncharacterized protein.	Uncharacterized protein.	0.653
LOC103173721	LOC103185642	ENSCMIP00000004048	ENSCMIP00000032765	Uncharacterized protein.	Uncharacterized protein.	0.707
LOC103173721	ggt7	ENSCMIP00000004048	ENSCMIP00000038400	Uncharacterized protein.	Uncharacterized protein.	0.830
LOC103173721	mgst1	ENSCMIP00000004048	ENSCMIP00000027207	Uncharacterized protein.	Uncharacterized protein.	0.693
LOC103173721	mgst2	ENSCMIP00000004048	ENSCMIP00000048210	Uncharacterized protein.	Microsomal glutathione S-transferase 2.	0.668
LOC103173721	mgst3	ENSCMIP00000004048	ENSCMIP00000045866	Uncharacterized protein.	Uncharacterized protein.	0.707
LOC103179505	LOC103173721	ENSCMIP00000041672	ENSCMIP00000004048	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC103179505	LOC103179940	ENSCMIP00000041672	ENSCMIP00000037136	Uncharacterized protein.	Uncharacterized protein.	0.848
LOC103179505	LOC103183976	ENSCMIP00000041672	ENSCMIP00000030304	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103179505	LOC103185642	ENSCMIP00000041672	ENSCMIP00000032765	Uncharacterized protein.	Uncharacterized protein.	0.707
LOC103179505	ggt7	ENSCMIP00000041672	ENSCMIP00000038400	Uncharacterized protein.	Uncharacterized protein.	0.826
LOC103179505	mgst1	ENSCMIP00000041672	ENSCMIP00000027207	Uncharacterized protein.	Uncharacterized protein.	0.693
LOC103179505	mgst2	ENSCMIP00000041672	ENSCMIP00000048210	Uncharacterized protein.	Microsomal glutathione S-transferase 2.	0.668
LOC103179505	mgst3	ENSCMIP00000041672	ENSCMIP00000045866	Uncharacterized protein.	Uncharacterized protein.	0.707
LOC103179940	LOC103173721	ENSCMIP00000037136	ENSCMIP00000004048	Uncharacterized protein.	Uncharacterized protein.	0.848
LOC103179940	LOC103179505	ENSCMIP00000037136	ENSCMIP00000041672	Uncharacterized protein.	Uncharacterized protein.	0.848
LOC103179940	LOC103183976	ENSCMIP00000037136	ENSCMIP00000030304	Uncharacterized protein.	Uncharacterized protein.	0.850
LOC103179940	LOC103185642	ENSCMIP00000037136	ENSCMIP00000032765	Uncharacterized protein.	Uncharacterized protein.	0.707