28 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCMIP00000004816	TFIIIC_sub6 domain-containing protein. (125 aa)
	crcp	RPOL4c domain-containing protein. (166 aa)
	tbpl1	TATA box-binding protein-like protein 1. (186 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	gtf3a	Uncharacterized protein. (300 aa)
	ENSCMIP00000024443	TFIIS-type domain-containing protein. (72 aa)
	polr2f	Uncharacterized protein. (98 aa)
	polr2k	Uncharacterized protein. (63 aa)
	tbp	Uncharacterized protein. (818 aa)
	LOC103178499	Uncharacterized protein. (333 aa)
	polr3g	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (224 aa)
	gtf3c1	B-block_TFIIIC domain-containing protein. (1939 aa)
	polr3e	Uncharacterized protein. (717 aa)
	polr3a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1383 aa)
	gtf3c2	WD_REPEATS_REGION domain-containing protein. (1265 aa)
	polr2e	Uncharacterized protein. (218 aa)
	gtf3c4	Uncharacterized protein. (793 aa)
	polr3b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1098 aa)
	ENSCMIP00000033564	Uncharacterized protein. (136 aa)
	polr3h	Uncharacterized protein. (205 aa)
	LOC103173200	Uncharacterized protein. (400 aa)
	Bdp1	SANT domain-containing protein. (1151 aa)
	polr3f	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (314 aa)
	gtf3c3	Uncharacterized protein. (833 aa)
	ENSCMIP00000033574	CYCLIN domain-containing protein. (143 aa)
	gtf3c5	Uncharacterized protein. (479 aa)
	Brf1	BRF1 domain-containing protein. (97 aa)
	polr1c	DNA-directed RNA polymerases I and III subunit RPAC1. (347 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bdp1	Brf1	ENSCMIP00000017966	ENSCMIP00000003426	SANT domain-containing protein.	BRF1 domain-containing protein.	0.920
Bdp1	ENSCMIP00000024443	ENSCMIP00000017966	ENSCMIP00000024443	SANT domain-containing protein.	TFIIS-type domain-containing protein.	0.868
Bdp1	ENSCMIP00000033564	ENSCMIP00000017966	ENSCMIP00000033564	SANT domain-containing protein.	Uncharacterized protein.	0.920
Bdp1	ENSCMIP00000033574	ENSCMIP00000017966	ENSCMIP00000033574	SANT domain-containing protein.	CYCLIN domain-containing protein.	0.920
Bdp1	LOC103173200	ENSCMIP00000017966	ENSCMIP00000009191	SANT domain-containing protein.	Uncharacterized protein.	0.929
Bdp1	LOC103178499	ENSCMIP00000017966	ENSCMIP00000000381	SANT domain-containing protein.	Uncharacterized protein.	0.929
Bdp1	crcp	ENSCMIP00000017966	ENSCMIP00000042913	SANT domain-containing protein.	RPOL4c domain-containing protein.	0.959
Bdp1	gtf3a	ENSCMIP00000017966	ENSCMIP00000019717	SANT domain-containing protein.	Uncharacterized protein.	0.811
Bdp1	gtf3c1	ENSCMIP00000017966	ENSCMIP00000015239	SANT domain-containing protein.	B-block_TFIIIC domain-containing protein.	0.863
Bdp1	gtf3c2	ENSCMIP00000017966	ENSCMIP00000042382	SANT domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.659
Bdp1	gtf3c3	ENSCMIP00000017966	ENSCMIP00000037926	SANT domain-containing protein.	Uncharacterized protein.	0.958
Bdp1	gtf3c4	ENSCMIP00000017966	ENSCMIP00000032322	SANT domain-containing protein.	Uncharacterized protein.	0.647
Bdp1	gtf3c5	ENSCMIP00000017966	ENSCMIP00000034378	SANT domain-containing protein.	Uncharacterized protein.	0.885
Bdp1	polr1c	ENSCMIP00000017966	ENSCMIP00000043677	SANT domain-containing protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.924
Bdp1	polr2e	ENSCMIP00000017966	ENSCMIP00000027487	SANT domain-containing protein.	Uncharacterized protein.	0.861
Bdp1	polr2f	ENSCMIP00000017966	ENSCMIP00000026897	SANT domain-containing protein.	Uncharacterized protein.	0.899
Bdp1	polr2h	ENSCMIP00000017966	ENSCMIP00000023257	SANT domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.899
Bdp1	polr2k	ENSCMIP00000017966	ENSCMIP00000002225	SANT domain-containing protein.	Uncharacterized protein.	0.874
Bdp1	polr3a	ENSCMIP00000017966	ENSCMIP00000011577	SANT domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.985
Bdp1	polr3b	ENSCMIP00000017966	ENSCMIP00000032437	SANT domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973