10 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	mdm2	RING-type domain-containing protein; Belongs to the MDM2/MDM4 family. (452 aa)
	usp4	Ubiquitin carboxyl-terminal hydrolase. (978 aa)
	uba7	UBA_e1_C domain-containing protein. (1052 aa)
	rad50	Zinc-hook domain-containing protein. (1312 aa)
	usp1	Ubiquitin carboxyl-terminal hydrolase. (785 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	usp15	Ubiquitin carboxyl-terminal hydrolase. (995 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	sumo2	Small ubiquitin-related modifier. (113 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103183812	LOC103186049	ENSCMIP00000018808	ENSCMIP00000018701	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103183812	mdm2	ENSCMIP00000018808	ENSCMIP00000047586	Small ubiquitin-related modifier.	RING-type domain-containing protein; Belongs to the MDM2/MDM4 family.	0.527
LOC103183812	rad50	ENSCMIP00000018808	ENSCMIP00000043048	Small ubiquitin-related modifier.	Zinc-hook domain-containing protein.	0.541
LOC103183812	sumo2	ENSCMIP00000018808	ENSCMIP00000001390	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.658
LOC103183812	uba7	ENSCMIP00000018808	ENSCMIP00000043792	Small ubiquitin-related modifier.	UBA_e1_C domain-containing protein.	0.703
LOC103186049	LOC103183812	ENSCMIP00000018701	ENSCMIP00000018808	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103186049	rad50	ENSCMIP00000018701	ENSCMIP00000043048	Small ubiquitin-related modifier.	Zinc-hook domain-containing protein.	0.475
LOC103186049	sumo1	ENSCMIP00000018701	ENSCMIP00000011551	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103186049	uba7	ENSCMIP00000018701	ENSCMIP00000043792	Small ubiquitin-related modifier.	UBA_e1_C domain-containing protein.	0.718
mdm2	LOC103183812	ENSCMIP00000047586	ENSCMIP00000018808	RING-type domain-containing protein; Belongs to the MDM2/MDM4 family.	Small ubiquitin-related modifier.	0.527
mdm2	sumo1	ENSCMIP00000047586	ENSCMIP00000011551	RING-type domain-containing protein; Belongs to the MDM2/MDM4 family.	Small ubiquitin-related modifier.	0.527
mdm2	usp15	ENSCMIP00000047586	ENSCMIP00000016157	RING-type domain-containing protein; Belongs to the MDM2/MDM4 family.	Ubiquitin carboxyl-terminal hydrolase.	0.511
mdm2	usp4	ENSCMIP00000047586	ENSCMIP00000044034	RING-type domain-containing protein; Belongs to the MDM2/MDM4 family.	Ubiquitin carboxyl-terminal hydrolase.	0.496
rad50	LOC103183812	ENSCMIP00000043048	ENSCMIP00000018808	Zinc-hook domain-containing protein.	Small ubiquitin-related modifier.	0.541
rad50	LOC103186049	ENSCMIP00000043048	ENSCMIP00000018701	Zinc-hook domain-containing protein.	Small ubiquitin-related modifier.	0.475
rad50	sumo1	ENSCMIP00000043048	ENSCMIP00000011551	Zinc-hook domain-containing protein.	Small ubiquitin-related modifier.	0.541
rad50	sumo2	ENSCMIP00000043048	ENSCMIP00000001390	Zinc-hook domain-containing protein.	Small ubiquitin-related modifier.	0.475
sumo1	LOC103186049	ENSCMIP00000011551	ENSCMIP00000018701	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
sumo1	mdm2	ENSCMIP00000011551	ENSCMIP00000047586	Small ubiquitin-related modifier.	RING-type domain-containing protein; Belongs to the MDM2/MDM4 family.	0.527
sumo1	rad50	ENSCMIP00000011551	ENSCMIP00000043048	Small ubiquitin-related modifier.	Zinc-hook domain-containing protein.	0.541