15 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103175726	TLDc domain-containing protein. (653 aa)
	ENSCMIP00000039929	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. (278 aa)
	Arf6	Uncharacterized protein. (156 aa)
	oxr1	LysM domain-containing protein. (891 aa)
	gpx4	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (127 aa)
	gpx7	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (141 aa)
	Gpx2	Glutathione peroxidase 2. (90 aa)
	ENSCMIP00000021759	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (217 aa)
	tbc1d24	TLDc domain-containing protein. (554 aa)
	Gpx3	Glutathione peroxidase 3 (Plasma). (102 aa)
	esr1	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (607 aa)
	LOC103179218	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (176 aa)
	gpx8	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (209 aa)
	actg1	Uncharacterized protein. (376 aa)
	gpx1	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (141 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arf6	LOC103175726	ENSCMIP00000030532	ENSCMIP00000043917	Uncharacterized protein.	TLDc domain-containing protein.	0.551
Arf6	LOC103179218	ENSCMIP00000030532	ENSCMIP00000011328	Uncharacterized protein.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.902
Arf6	oxr1	ENSCMIP00000030532	ENSCMIP00000030451	Uncharacterized protein.	LysM domain-containing protein.	0.436
Arf6	tbc1d24	ENSCMIP00000030532	ENSCMIP00000015614	Uncharacterized protein.	TLDc domain-containing protein.	0.736
ENSCMIP00000021759	ENSCMIP00000039929	ENSCMIP00000021759	ENSCMIP00000039929	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	0.596
ENSCMIP00000021759	oxr1	ENSCMIP00000021759	ENSCMIP00000030451	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	LysM domain-containing protein.	0.401
ENSCMIP00000039929	ENSCMIP00000021759	ENSCMIP00000039929	ENSCMIP00000021759	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.596
ENSCMIP00000039929	Gpx2	ENSCMIP00000039929	ENSCMIP00000022744	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Glutathione peroxidase 2.	0.610
ENSCMIP00000039929	Gpx3	ENSCMIP00000039929	ENSCMIP00000014561	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Glutathione peroxidase 3 (Plasma).	0.596
ENSCMIP00000039929	LOC103179218	ENSCMIP00000039929	ENSCMIP00000011328	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.440
ENSCMIP00000039929	gpx1	ENSCMIP00000039929	ENSCMIP00000043916	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.645
ENSCMIP00000039929	gpx4	ENSCMIP00000039929	ENSCMIP00000027410	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.599
ENSCMIP00000039929	gpx7	ENSCMIP00000039929	ENSCMIP00000024655	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.601
ENSCMIP00000039929	gpx8	ENSCMIP00000039929	ENSCMIP00000048318	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.626
ENSCMIP00000039929	oxr1	ENSCMIP00000039929	ENSCMIP00000030451	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	LysM domain-containing protein.	0.560
Gpx2	ENSCMIP00000039929	ENSCMIP00000022744	ENSCMIP00000039929	Glutathione peroxidase 2.	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	0.610
Gpx2	Gpx3	ENSCMIP00000022744	ENSCMIP00000014561	Glutathione peroxidase 2.	Glutathione peroxidase 3 (Plasma).	0.901
Gpx2	gpx1	ENSCMIP00000022744	ENSCMIP00000043916	Glutathione peroxidase 2.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.901
Gpx2	gpx4	ENSCMIP00000022744	ENSCMIP00000027410	Glutathione peroxidase 2.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.965
Gpx2	gpx7	ENSCMIP00000022744	ENSCMIP00000024655	Glutathione peroxidase 2.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.948