18 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sumo2	Small ubiquitin-related modifier. (113 aa)
	tbc1d15	Rab-GAP TBC domain-containing protein. (680 aa)
	Rabif	Uncharacterized protein. (88 aa)
	rab3a	Uncharacterized protein. (224 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	rab10	Ras-related protein Rab-10-like protein. (200 aa)
	pink1	Protein kinase domain-containing protein. (415 aa)
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	rabggtb	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (343 aa)
	rab8a	Uncharacterized protein. (233 aa)
	gdi2	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (435 aa)
	rab5b	Ras-related protein Rab-5B-like protein. (215 aa)
	msn	FERM domain-containing protein. (606 aa)
	Rab2a	Ras-related protein Rab-2A. (212 aa)
	inpp5b	Rho-GAP domain-containing protein. (861 aa)
	pten	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family. (406 aa)
	rab7a	Uncharacterized protein. (247 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103183812	LOC103186049	ENSCMIP00000018808	ENSCMIP00000018701	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103183812	rab10	ENSCMIP00000018808	ENSCMIP00000012027	Small ubiquitin-related modifier.	Ras-related protein Rab-10-like protein.	0.534
LOC103183812	rab8a	ENSCMIP00000018808	ENSCMIP00000025812	Small ubiquitin-related modifier.	Uncharacterized protein.	0.535
LOC103183812	sumo2	ENSCMIP00000018808	ENSCMIP00000001390	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.658
LOC103186049	LOC103183812	ENSCMIP00000018701	ENSCMIP00000018808	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103186049	rab10	ENSCMIP00000018701	ENSCMIP00000012027	Small ubiquitin-related modifier.	Ras-related protein Rab-10-like protein.	0.529
LOC103186049	rab8a	ENSCMIP00000018701	ENSCMIP00000025812	Small ubiquitin-related modifier.	Uncharacterized protein.	0.530
LOC103186049	sumo1	ENSCMIP00000018701	ENSCMIP00000011551	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
Rab2a	gdi2	ENSCMIP00000044224	ENSCMIP00000026379	Ras-related protein Rab-2A.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.569
Rab2a	rab5b	ENSCMIP00000044224	ENSCMIP00000035168	Ras-related protein Rab-2A.	Ras-related protein Rab-5B-like protein.	0.472
Rab2a	rabggtb	ENSCMIP00000044224	ENSCMIP00000021008	Ras-related protein Rab-2A.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.830
Rab2a	tbc1d15	ENSCMIP00000044224	ENSCMIP00000001762	Ras-related protein Rab-2A.	Rab-GAP TBC domain-containing protein.	0.426
Rabif	gdi2	ENSCMIP00000002574	ENSCMIP00000026379	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.716
Rabif	rab10	ENSCMIP00000002574	ENSCMIP00000012027	Uncharacterized protein.	Ras-related protein Rab-10-like protein.	0.752
Rabif	rab3a	ENSCMIP00000002574	ENSCMIP00000010874	Uncharacterized protein.	Uncharacterized protein.	0.596
Rabif	rab7a	ENSCMIP00000002574	ENSCMIP00000047360	Uncharacterized protein.	Uncharacterized protein.	0.461
Rabif	rab8a	ENSCMIP00000002574	ENSCMIP00000025812	Uncharacterized protein.	Uncharacterized protein.	0.752
Rabif	rabggtb	ENSCMIP00000002574	ENSCMIP00000021008	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.531
gdi2	Rab2a	ENSCMIP00000026379	ENSCMIP00000044224	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-2A.	0.569
gdi2	Rabif	ENSCMIP00000026379	ENSCMIP00000002574	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.716