23 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sin3b	HDAC_interact domain-containing protein. (1155 aa)
	plek	Pleckstrin-like protein. (355 aa)
	ank3	Uncharacterized protein. (2456 aa)
	Ankrd31	ANK_REP_REGION domain-containing protein. (768 aa)
	Rps20	Ribosomal_S10 domain-containing protein. (149 aa)
	sohlh1	BHLH domain-containing protein. (326 aa)
	rec114	Uncharacterized protein. (240 aa)
	phka2	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. Belongs to the phosphorylase b kinase regulatory chain family. (1245 aa)
	sycp1	Uncharacterized protein. (782 aa)
	plek2	Uncharacterized protein. (358 aa)
	atm	Non-specific serine/threonine protein kinase. (2987 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	med10	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (94 aa)
	ctnna1	Uncharacterized protein. (953 aa)
	ank2	Uncharacterized protein. (3696 aa)
	ankyrin-1-2	Uncharacterized protein. (1805 aa)
	Mei1	Uncharacterized protein. (406 aa)
	ENSCMIP00000011641	Histone H3; Belongs to the histone H3 family. (100 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	LOC103173215	Histone H3; Belongs to the histone H3 family. (136 aa)
	sumo2	Small ubiquitin-related modifier. (113 aa)
	carm1	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (622 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ankrd31	LOC103186049	ENSCMIP00000043567	ENSCMIP00000018701	ANK_REP_REGION domain-containing protein.	Small ubiquitin-related modifier.	0.403
Ankrd31	Mei1	ENSCMIP00000043567	ENSCMIP00000011691	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.656
Ankrd31	Rps20	ENSCMIP00000043567	ENSCMIP00000038698	ANK_REP_REGION domain-containing protein.	Ribosomal_S10 domain-containing protein.	0.536
Ankrd31	atm	ENSCMIP00000043567	ENSCMIP00000019360	ANK_REP_REGION domain-containing protein.	Non-specific serine/threonine protein kinase.	0.624
Ankrd31	ctnna1	ENSCMIP00000043567	ENSCMIP00000015876	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.501
Ankrd31	med10	ENSCMIP00000043567	ENSCMIP00000016561	ANK_REP_REGION domain-containing protein.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.521
Ankrd31	phka2	ENSCMIP00000043567	ENSCMIP00000023044	ANK_REP_REGION domain-containing protein.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. Belongs to the phosphorylase b kinase regulatory chain family.	0.531
Ankrd31	rec114	ENSCMIP00000043567	ENSCMIP00000027188	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.560
Ankrd31	sin3b	ENSCMIP00000043567	ENSCMIP00000011913	ANK_REP_REGION domain-containing protein.	HDAC_interact domain-containing protein.	0.544
Ankrd31	sohlh1	ENSCMIP00000043567	ENSCMIP00000033653	ANK_REP_REGION domain-containing protein.	BHLH domain-containing protein.	0.521
Ankrd31	sumo2	ENSCMIP00000043567	ENSCMIP00000001390	ANK_REP_REGION domain-containing protein.	Small ubiquitin-related modifier.	0.403
Ankrd31	sycp1	ENSCMIP00000043567	ENSCMIP00000022114	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.561
ENSCMIP00000011641	carm1	ENSCMIP00000011641	ENSCMIP00000001087	Histone H3; Belongs to the histone H3 family.	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.715
ENSCMIP00000011641	sin3b	ENSCMIP00000011641	ENSCMIP00000011913	Histone H3; Belongs to the histone H3 family.	HDAC_interact domain-containing protein.	0.551
LOC103173215	carm1	ENSCMIP00000004218	ENSCMIP00000001087	Histone H3; Belongs to the histone H3 family.	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.715
LOC103173215	sin3b	ENSCMIP00000004218	ENSCMIP00000011913	Histone H3; Belongs to the histone H3 family.	HDAC_interact domain-containing protein.	0.551
LOC103183812	LOC103186049	ENSCMIP00000018808	ENSCMIP00000018701	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103183812	atm	ENSCMIP00000018808	ENSCMIP00000019360	Small ubiquitin-related modifier.	Non-specific serine/threonine protein kinase.	0.505
LOC103183812	sumo2	ENSCMIP00000018808	ENSCMIP00000001390	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.658
LOC103186049	Ankrd31	ENSCMIP00000018701	ENSCMIP00000043567	Small ubiquitin-related modifier.	ANK_REP_REGION domain-containing protein.	0.403