26 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbx1	RING-type domain-containing protein. (107 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	usp22	Ubiquitin carboxyl-terminal hydrolase. (562 aa)
	LOC103176829	IGv domain-containing protein. (230 aa)
	LOC103173319	Uncharacterized protein. (274 aa)
	lgals3	Galectin. (248 aa)
	sumo2	Small ubiquitin-related modifier. (113 aa)
	cdk4	Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily. (302 aa)
	il10	Uncharacterized protein. (189 aa)
	ube2d1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	marchf4	RING-CH-type domain-containing protein. (367 aa)
	fgl1	Fibrinogen-like protein 1. (317 aa)
	uchl1	Ubiquitin carboxyl-terminal hydrolase. (223 aa)
	snca	Alpha-synuclein; Belongs to the synuclein family. (144 aa)
	usp9x	USP domain-containing protein; Belongs to the peptidase C19 family. (2567 aa)
	tmem129	Uncharacterized protein. (361 aa)
	fbxw7	Uncharacterized protein. (771 aa)
	usp7	Uncharacterized protein; Belongs to the peptidase C19 family. (1132 aa)
	March1	RING-CH-type domain-containing protein. (254 aa)
	spop	Uncharacterized protein. (432 aa)
	spopl	Uncharacterized protein. (394 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	cul1	CULLIN_2 domain-containing protein; Belongs to the cullin family. (777 aa)
	skp1	Uncharacterized protein; Belongs to the SKP1 family. (168 aa)
	amfr	Uncharacterized protein. (693 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173319	usp22	ENSCMIP00000004821	ENSCMIP00000011221	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.567
LOC103176829	il10	ENSCMIP00000010300	ENSCMIP00000004896	IGv domain-containing protein.	Uncharacterized protein.	0.564
LOC103176829	lgals3	ENSCMIP00000010300	ENSCMIP00000000276	IGv domain-containing protein.	Galectin.	0.474
LOC103183812	LOC103186049	ENSCMIP00000018808	ENSCMIP00000018701	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103183812	rbx1	ENSCMIP00000018808	ENSCMIP00000011588	Small ubiquitin-related modifier.	RING-type domain-containing protein.	0.752
LOC103183812	skp1	ENSCMIP00000018808	ENSCMIP00000012263	Small ubiquitin-related modifier.	Uncharacterized protein; Belongs to the SKP1 family.	0.425
LOC103183812	sumo2	ENSCMIP00000018808	ENSCMIP00000001390	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.658
LOC103183812	ube2d1	ENSCMIP00000018808	ENSCMIP00000047495	Small ubiquitin-related modifier.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.520
LOC103186049	LOC103183812	ENSCMIP00000018701	ENSCMIP00000018808	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103186049	rbx1	ENSCMIP00000018701	ENSCMIP00000011588	Small ubiquitin-related modifier.	RING-type domain-containing protein.	0.711
LOC103186049	skp1	ENSCMIP00000018701	ENSCMIP00000012263	Small ubiquitin-related modifier.	Uncharacterized protein; Belongs to the SKP1 family.	0.452
LOC103186049	sumo1	ENSCMIP00000018701	ENSCMIP00000011551	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
LOC103186049	ube2d1	ENSCMIP00000018701	ENSCMIP00000047495	Small ubiquitin-related modifier.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.520
amfr	tmem129	ENSCMIP00000011689	ENSCMIP00000023036	Uncharacterized protein.	Uncharacterized protein.	0.455
amfr	ube2d1	ENSCMIP00000011689	ENSCMIP00000047495	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.466
cdk4	cul1	ENSCMIP00000003455	ENSCMIP00000014923	Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.691
cdk4	skp1	ENSCMIP00000003455	ENSCMIP00000012263	Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the SKP1 family.	0.628
cul1	cdk4	ENSCMIP00000014923	ENSCMIP00000003455	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.	0.691
cul1	fbxw7	ENSCMIP00000014923	ENSCMIP00000022422	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.786
cul1	rbx1	ENSCMIP00000014923	ENSCMIP00000011588	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.999