33 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vcam1	Uncharacterized protein. (596 aa)
	LOC103185526	Uncharacterized protein. (455 aa)
	gpx7	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (141 aa)
	LOC103186822	Uncharacterized protein. (486 aa)
	Gpx2	Glutathione peroxidase 2. (90 aa)
	ENSCMIP00000021759	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (217 aa)
	prep	Uncharacterized protein. (736 aa)
	enpep	Aminopeptidase. (809 aa)
	Gpx3	Glutathione peroxidase 3 (Plasma). (102 aa)
	pxdn	Uncharacterized protein. (1406 aa)
	LOC103173158	Uncharacterized protein. (236 aa)
	Serpina10	Protein Z-dependent protease inhibitor; Belongs to the serpin family. (447 aa)
	ENSCMIP00000004230	Uncharacterized protein. (139 aa)
	LOC103171910	Uncharacterized protein. (412 aa)
	ptx3	Uncharacterized protein. (420 aa)
	LOC103174069	Uncharacterized protein. (389 aa)
	ENSCMIP00000001271	Uncharacterized protein. (321 aa)
	ENSCMIP00000002058	Uncharacterized protein. (248 aa)
	trhde	Aminopeptidase. (981 aa)
	anpep	Aminopeptidase. (966 aa)
	gpx8	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (209 aa)
	gpx1	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (141 aa)
	erap2	Aminopeptidase. (851 aa)
	LOC103178391	Aminopeptidase. (902 aa)
	ENSCMIP00000041936	Aminopeptidase. (825 aa)
	LOC103186298	Uncharacterized protein. (1444 aa)
	LOC103185706	Aminopeptidase. (966 aa)
	pxdnl	Uncharacterized protein. (1459 aa)
	flrt1	Fibronectin type-III domain-containing protein. (650 aa)
	c3	Uncharacterized protein. (1654 aa)
	serpinf2	Alpha-2-antiplasmin; Belongs to the serpin family. (516 aa)
	gpx4	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (127 aa)
	LOC103185529	F10 protein. (474 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gpx2	Gpx3	ENSCMIP00000022744	ENSCMIP00000014561	Glutathione peroxidase 2.	Glutathione peroxidase 3 (Plasma).	0.901
Gpx2	gpx1	ENSCMIP00000022744	ENSCMIP00000043916	Glutathione peroxidase 2.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.901
Gpx2	gpx4	ENSCMIP00000022744	ENSCMIP00000027410	Glutathione peroxidase 2.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.965
Gpx2	gpx7	ENSCMIP00000022744	ENSCMIP00000024655	Glutathione peroxidase 2.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.948
Gpx2	gpx8	ENSCMIP00000022744	ENSCMIP00000048318	Glutathione peroxidase 2.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.974
Gpx3	Gpx2	ENSCMIP00000014561	ENSCMIP00000022744	Glutathione peroxidase 3 (Plasma).	Glutathione peroxidase 2.	0.901
Gpx3	gpx1	ENSCMIP00000014561	ENSCMIP00000043916	Glutathione peroxidase 3 (Plasma).	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.902
Gpx3	gpx4	ENSCMIP00000014561	ENSCMIP00000027410	Glutathione peroxidase 3 (Plasma).	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.914
Gpx3	gpx7	ENSCMIP00000014561	ENSCMIP00000024655	Glutathione peroxidase 3 (Plasma).	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.914
Gpx3	gpx8	ENSCMIP00000014561	ENSCMIP00000048318	Glutathione peroxidase 3 (Plasma).	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.918
LOC103185526	Serpina10	ENSCMIP00000026314	ENSCMIP00000008924	Uncharacterized protein.	Protein Z-dependent protease inhibitor; Belongs to the serpin family.	0.583
LOC103185529	Serpina10	ENSCMIP00000026321	ENSCMIP00000008924	F10 protein.	Protein Z-dependent protease inhibitor; Belongs to the serpin family.	0.583
LOC103186822	Serpina10	ENSCMIP00000023783	ENSCMIP00000008924	Uncharacterized protein.	Protein Z-dependent protease inhibitor; Belongs to the serpin family.	0.583
Serpina10	LOC103185526	ENSCMIP00000008924	ENSCMIP00000026314	Protein Z-dependent protease inhibitor; Belongs to the serpin family.	Uncharacterized protein.	0.583
Serpina10	LOC103185529	ENSCMIP00000008924	ENSCMIP00000026321	Protein Z-dependent protease inhibitor; Belongs to the serpin family.	F10 protein.	0.583
Serpina10	LOC103186822	ENSCMIP00000008924	ENSCMIP00000023783	Protein Z-dependent protease inhibitor; Belongs to the serpin family.	Uncharacterized protein.	0.583
Serpina10	serpinf2	ENSCMIP00000008924	ENSCMIP00000029699	Protein Z-dependent protease inhibitor; Belongs to the serpin family.	Alpha-2-antiplasmin; Belongs to the serpin family.	0.479
enpep	prep	ENSCMIP00000015307	ENSCMIP00000018069	Aminopeptidase.	Uncharacterized protein.	0.408
gpx1	Gpx2	ENSCMIP00000043916	ENSCMIP00000022744	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Glutathione peroxidase 2.	0.901
gpx1	Gpx3	ENSCMIP00000043916	ENSCMIP00000014561	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Glutathione peroxidase 3 (Plasma).	0.902