5 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ranbp2	Uncharacterized protein. (3000 aa)
	ranbp3	RanBD1 domain-containing protein. (556 aa)
	nup50	Nuclear pore complex protein Nup50. (475 aa)
	ranbp1	RanBD1 domain-containing protein. (213 aa)
	ENSCMIP00000004712	RanBD1 domain-containing protein. (240 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004712	nup50	ENSCMIP00000004712	ENSCMIP00000032871	RanBD1 domain-containing protein.	Nuclear pore complex protein Nup50.	0.966
ENSCMIP00000004712	ranbp2	ENSCMIP00000004712	ENSCMIP00000038177	RanBD1 domain-containing protein.	Uncharacterized protein.	0.475
nup50	ENSCMIP00000004712	ENSCMIP00000032871	ENSCMIP00000004712	Nuclear pore complex protein Nup50.	RanBD1 domain-containing protein.	0.966
nup50	ranbp1	ENSCMIP00000032871	ENSCMIP00000031349	Nuclear pore complex protein Nup50.	RanBD1 domain-containing protein.	0.715
nup50	ranbp2	ENSCMIP00000032871	ENSCMIP00000038177	Nuclear pore complex protein Nup50.	Uncharacterized protein.	0.972
nup50	ranbp3	ENSCMIP00000032871	ENSCMIP00000033410	Nuclear pore complex protein Nup50.	RanBD1 domain-containing protein.	0.688
ranbp1	nup50	ENSCMIP00000031349	ENSCMIP00000032871	RanBD1 domain-containing protein.	Nuclear pore complex protein Nup50.	0.715
ranbp1	ranbp2	ENSCMIP00000031349	ENSCMIP00000038177	RanBD1 domain-containing protein.	Uncharacterized protein.	0.508
ranbp1	ranbp3	ENSCMIP00000031349	ENSCMIP00000033410	RanBD1 domain-containing protein.	RanBD1 domain-containing protein.	0.636
ranbp2	ENSCMIP00000004712	ENSCMIP00000038177	ENSCMIP00000004712	Uncharacterized protein.	RanBD1 domain-containing protein.	0.475
ranbp2	nup50	ENSCMIP00000038177	ENSCMIP00000032871	Uncharacterized protein.	Nuclear pore complex protein Nup50.	0.972
ranbp2	ranbp1	ENSCMIP00000038177	ENSCMIP00000031349	Uncharacterized protein.	RanBD1 domain-containing protein.	0.508
ranbp2	ranbp3	ENSCMIP00000038177	ENSCMIP00000033410	Uncharacterized protein.	RanBD1 domain-containing protein.	0.414
ranbp3	nup50	ENSCMIP00000033410	ENSCMIP00000032871	RanBD1 domain-containing protein.	Nuclear pore complex protein Nup50.	0.688
ranbp3	ranbp1	ENSCMIP00000033410	ENSCMIP00000031349	RanBD1 domain-containing protein.	RanBD1 domain-containing protein.	0.636
ranbp3	ranbp2	ENSCMIP00000033410	ENSCMIP00000038177	RanBD1 domain-containing protein.	Uncharacterized protein.	0.414