35 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pla2g12a	Uncharacterized protein. (130 aa)
	LOC103173721	Uncharacterized protein. (300 aa)
	ENSCMIP00000004237	PA2c domain-containing protein. (129 aa)
	LOC103173600	CS domain-containing protein. (239 aa)
	pla2g12b	Uncharacterized protein. (200 aa)
	LOC103188674	Phospholipase A(2). (151 aa)
	ENSCMIP00000010610	LRAT domain-containing protein. (131 aa)
	LOC103183746	Uncharacterized protein; Belongs to the cytochrome P450 family. (385 aa)
	LOC103171704	Uncharacterized protein. (268 aa)
	ltc4s	Leukotriene C4 synthase. (169 aa)
	Gpx3	Glutathione peroxidase 3 (Plasma). (102 aa)
	LOC103189864	Phospholipase A(2). (153 aa)
	LOC103189875	Cytosolic phospholipase A2 gamma-like protein. (553 aa)
	Gpx2	Glutathione peroxidase 2. (90 aa)
	gpx7	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (141 aa)
	hpgds	Uncharacterized protein. (237 aa)
	ptgis	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	LOC103183976	Uncharacterized protein. (558 aa)
	ptgs1	EGF-like domain-containing protein. (573 aa)
	lta4h	Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family. (611 aa)
	LOC103179940	Uncharacterized protein. (611 aa)
	ptges2	Uncharacterized protein; Belongs to the GST superfamily. (342 aa)
	LOC103186742	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (286 aa)
	LOC103186743	Carbonyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (275 aa)
	ptges	Prostaglandin E synthase. (145 aa)
	LOC103190668	Phospholipase A(2). (151 aa)
	LOC103179505	Uncharacterized protein. (549 aa)
	ptgs2	EGF-like domain-containing protein. (655 aa)
	pla2g4a	Phospholipase A2. (769 aa)
	proca1	PA2c domain-containing protein. (677 aa)
	gpx1	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (141 aa)
	alox5	Uncharacterized protein. (674 aa)
	LOC103185273	Uncharacterized protein; Belongs to the cytochrome P450 family. (507 aa)
	gpx8	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (209 aa)
	tbxas1	Uncharacterized protein; Belongs to the cytochrome P450 family. (543 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004237	ENSCMIP00000010610	ENSCMIP00000004237	ENSCMIP00000010610	PA2c domain-containing protein.	LRAT domain-containing protein.	0.650
ENSCMIP00000004237	LOC103171704	ENSCMIP00000004237	ENSCMIP00000012782	PA2c domain-containing protein.	Uncharacterized protein.	0.650
ENSCMIP00000004237	LOC103183746	ENSCMIP00000004237	ENSCMIP00000012240	PA2c domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.900
ENSCMIP00000004237	LOC103185273	ENSCMIP00000004237	ENSCMIP00000047415	PA2c domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.900
ENSCMIP00000004237	LOC103188674	ENSCMIP00000004237	ENSCMIP00000009029	PA2c domain-containing protein.	Phospholipase A(2).	0.921
ENSCMIP00000004237	LOC103189864	ENSCMIP00000004237	ENSCMIP00000020808	PA2c domain-containing protein.	Phospholipase A(2).	0.906
ENSCMIP00000004237	LOC103189875	ENSCMIP00000004237	ENSCMIP00000020925	PA2c domain-containing protein.	Cytosolic phospholipase A2 gamma-like protein.	0.915
ENSCMIP00000004237	LOC103190668	ENSCMIP00000004237	ENSCMIP00000040773	PA2c domain-containing protein.	Phospholipase A(2).	0.906
ENSCMIP00000004237	alox5	ENSCMIP00000004237	ENSCMIP00000045226	PA2c domain-containing protein.	Uncharacterized protein.	0.900
ENSCMIP00000004237	pla2g12a	ENSCMIP00000004237	ENSCMIP00000004034	PA2c domain-containing protein.	Uncharacterized protein.	0.937
ENSCMIP00000004237	pla2g12b	ENSCMIP00000004237	ENSCMIP00000005064	PA2c domain-containing protein.	Uncharacterized protein.	0.918
ENSCMIP00000004237	pla2g4a	ENSCMIP00000004237	ENSCMIP00000042093	PA2c domain-containing protein.	Phospholipase A2.	0.948
ENSCMIP00000004237	proca1	ENSCMIP00000004237	ENSCMIP00000043640	PA2c domain-containing protein.	PA2c domain-containing protein.	0.905
ENSCMIP00000004237	ptgs1	ENSCMIP00000004237	ENSCMIP00000033379	PA2c domain-containing protein.	EGF-like domain-containing protein.	0.650
ENSCMIP00000004237	ptgs2	ENSCMIP00000004237	ENSCMIP00000041748	PA2c domain-containing protein.	EGF-like domain-containing protein.	0.650
ENSCMIP00000010610	ENSCMIP00000004237	ENSCMIP00000010610	ENSCMIP00000004237	LRAT domain-containing protein.	PA2c domain-containing protein.	0.650
ENSCMIP00000010610	LOC103171704	ENSCMIP00000010610	ENSCMIP00000012782	LRAT domain-containing protein.	Uncharacterized protein.	0.900
ENSCMIP00000010610	LOC103183746	ENSCMIP00000010610	ENSCMIP00000012240	LRAT domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.900
ENSCMIP00000010610	LOC103185273	ENSCMIP00000010610	ENSCMIP00000047415	LRAT domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.900
ENSCMIP00000010610	LOC103188674	ENSCMIP00000010610	ENSCMIP00000009029	LRAT domain-containing protein.	Phospholipase A(2).	0.650