(12 nodes) Mixed, incl. CID domain, and Transcription termination site sequence-specific DNA binding network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCAF11	SR-related CTD associated factor 11. (1500 aa)
	SCAF8	SR-related CTD associated factor 8. (1071 aa)
	CCDC66	Coiled-coil domain containing 66. (966 aa)
	TRANK1	Tetratricopeptide repeat and ankyrin repeat containing 1. (2875 aa)
	XRN2	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (921 aa)
	RPRD1B	Regulation of nuclear pre-mRNA domain containing 1B. (327 aa)
	RPRD2	Regulation of nuclear pre-mRNA domain containing 2. (1445 aa)
	DXO	Decapping exoribonuclease. (413 aa)
	RPAP2	RNA polymerase II associated protein 2. (561 aa)
	SCAF4	SR-related CTD associated factor 4. (1077 aa)
	FBF1	Fas binding factor 1. (1058 aa)
	SETX	Senataxin. (2165 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC66	DXO	ENSLACP00000005377	ENSLACP00000012867	Coiled-coil domain containing 66.	Decapping exoribonuclease.	0.695
CCDC66	RPAP2	ENSLACP00000005377	ENSLACP00000015721	Coiled-coil domain containing 66.	RNA polymerase II associated protein 2.	0.793
CCDC66	XRN2	ENSLACP00000005377	ENSLACP00000009418	Coiled-coil domain containing 66.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.854
DXO	CCDC66	ENSLACP00000012867	ENSLACP00000005377	Decapping exoribonuclease.	Coiled-coil domain containing 66.	0.695
DXO	FBF1	ENSLACP00000012867	ENSLACP00000019937	Decapping exoribonuclease.	Fas binding factor 1.	0.917
DXO	RPAP2	ENSLACP00000012867	ENSLACP00000015721	Decapping exoribonuclease.	RNA polymerase II associated protein 2.	0.458
DXO	RPRD1B	ENSLACP00000012867	ENSLACP00000010437	Decapping exoribonuclease.	Regulation of nuclear pre-mRNA domain containing 1B.	0.917
DXO	RPRD2	ENSLACP00000012867	ENSLACP00000011080	Decapping exoribonuclease.	Regulation of nuclear pre-mRNA domain containing 2.	0.695
DXO	XRN2	ENSLACP00000012867	ENSLACP00000009418	Decapping exoribonuclease.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.999
FBF1	DXO	ENSLACP00000019937	ENSLACP00000012867	Fas binding factor 1.	Decapping exoribonuclease.	0.917
FBF1	RPAP2	ENSLACP00000019937	ENSLACP00000015721	Fas binding factor 1.	RNA polymerase II associated protein 2.	0.869
FBF1	RPRD2	ENSLACP00000019937	ENSLACP00000011080	Fas binding factor 1.	Regulation of nuclear pre-mRNA domain containing 2.	0.811
FBF1	SCAF4	ENSLACP00000019937	ENSLACP00000015799	Fas binding factor 1.	SR-related CTD associated factor 4.	0.451
FBF1	SCAF8	ENSLACP00000019937	ENSLACP00000001561	Fas binding factor 1.	SR-related CTD associated factor 8.	0.451
FBF1	SETX	ENSLACP00000019937	ENSLACP00000020632	Fas binding factor 1.	Senataxin.	0.420
FBF1	XRN2	ENSLACP00000019937	ENSLACP00000009418	Fas binding factor 1.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.926
RPAP2	CCDC66	ENSLACP00000015721	ENSLACP00000005377	RNA polymerase II associated protein 2.	Coiled-coil domain containing 66.	0.793
RPAP2	DXO	ENSLACP00000015721	ENSLACP00000012867	RNA polymerase II associated protein 2.	Decapping exoribonuclease.	0.458
RPAP2	FBF1	ENSLACP00000015721	ENSLACP00000019937	RNA polymerase II associated protein 2.	Fas binding factor 1.	0.869
RPAP2	RPRD1B	ENSLACP00000015721	ENSLACP00000010437	RNA polymerase II associated protein 2.	Regulation of nuclear pre-mRNA domain containing 1B.	0.946