(28 nodes) EPM2A-interacting protein 1/ZBED8-like network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2ZRM2_LATCH	Uncharacterized protein. (120 aa)
	H2ZRQ4_LATCH	Uncharacterized protein. (430 aa)
	H2ZUC4_LATCH	Uncharacterized protein. (244 aa)
	H2ZV75_LATCH	Uncharacterized protein. (211 aa)
	H2ZVL6_LATCH	Dimer_Tnp_hAT domain-containing protein. (465 aa)
	H2ZVV2_LATCH	Dimer_Tnp_hAT domain-containing protein. (220 aa)
	H2ZX62_LATCH	Uncharacterized protein. (373 aa)
	H3A0C4_LATCH	Uncharacterized protein. (204 aa)
	H3A1Q4_LATCH	Uncharacterized protein. (165 aa)
	H3A6C6_LATCH	Dimer_Tnp_hAT domain-containing protein. (210 aa)
	H3A711_LATCH	Uncharacterized protein. (446 aa)
	H3ABK8_LATCH	DUF4371 domain-containing protein. (299 aa)
	H3ABZ3_LATCH	Dimer_Tnp_hAT domain-containing protein. (546 aa)
	H3AC63_LATCH	Uncharacterized protein. (472 aa)
	H3AEH0_LATCH	Uncharacterized protein. (250 aa)
	H3AFG3_LATCH	Dimer_Tnp_hAT domain-containing protein. (202 aa)
	H3AFH7_LATCH	Uncharacterized protein. (364 aa)
	H3AFI1_LATCH	Uncharacterized protein. (241 aa)
	H3ALC5_LATCH	Uncharacterized protein. (537 aa)
	H3APJ3_LATCH	Dimer_Tnp_hAT domain-containing protein. (226 aa)
	H3ASZ0_LATCH	Uncharacterized protein. (205 aa)
	H3AYD7_LATCH	DUF4371 domain-containing protein. (267 aa)
	H3AZ56_LATCH	Dimer_Tnp_hAT domain-containing protein. (458 aa)
	H3B6H7_LATCH	Dimer_Tnp_hAT domain-containing protein. (246 aa)
	H3B749_LATCH	Uncharacterized protein. (360 aa)
	H3B7Z8_LATCH	Uncharacterized protein. (159 aa)
	H3B901_LATCH	Uncharacterized protein. (352 aa)
	H3BGZ2_LATCH	Uncharacterized protein. (176 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZRM2_LATCH	H2ZUC4_LATCH	ENSLACP00000000043	ENSLACP00000000995	Uncharacterized protein.	Uncharacterized protein.	0.511
H2ZRM2_LATCH	H2ZX62_LATCH	ENSLACP00000000043	ENSLACP00000001983	Uncharacterized protein.	Uncharacterized protein.	0.410
H2ZRM2_LATCH	H3A1Q4_LATCH	ENSLACP00000000043	ENSLACP00000003575	Uncharacterized protein.	Uncharacterized protein.	0.433
H2ZRM2_LATCH	H3B901_LATCH	ENSLACP00000000043	ENSLACP00000018372	Uncharacterized protein.	Uncharacterized protein.	0.448
H2ZRM2_LATCH	H3BGZ2_LATCH	ENSLACP00000000043	ENSLACP00000021163	Uncharacterized protein.	Uncharacterized protein.	0.477
H2ZRQ4_LATCH	H2ZX62_LATCH	ENSLACP00000000075	ENSLACP00000001983	Uncharacterized protein.	Uncharacterized protein.	0.515
H2ZRQ4_LATCH	H3A1Q4_LATCH	ENSLACP00000000075	ENSLACP00000003575	Uncharacterized protein.	Uncharacterized protein.	0.511
H2ZRQ4_LATCH	H3AFI1_LATCH	ENSLACP00000000075	ENSLACP00000008402	Uncharacterized protein.	Uncharacterized protein.	0.459
H2ZRQ4_LATCH	H3B749_LATCH	ENSLACP00000000075	ENSLACP00000017720	Uncharacterized protein.	Uncharacterized protein.	0.496
H2ZRQ4_LATCH	H3B7Z8_LATCH	ENSLACP00000000075	ENSLACP00000018019	Uncharacterized protein.	Uncharacterized protein.	0.460
H2ZUC4_LATCH	H2ZRM2_LATCH	ENSLACP00000000995	ENSLACP00000000043	Uncharacterized protein.	Uncharacterized protein.	0.511
H2ZUC4_LATCH	H2ZX62_LATCH	ENSLACP00000000995	ENSLACP00000001983	Uncharacterized protein.	Uncharacterized protein.	0.425
H2ZUC4_LATCH	H3A711_LATCH	ENSLACP00000000995	ENSLACP00000005432	Uncharacterized protein.	Uncharacterized protein.	0.428
H2ZUC4_LATCH	H3AZ56_LATCH	ENSLACP00000000995	ENSLACP00000014927	Uncharacterized protein.	Dimer_Tnp_hAT domain-containing protein.	0.426
H2ZUC4_LATCH	H3BGZ2_LATCH	ENSLACP00000000995	ENSLACP00000021163	Uncharacterized protein.	Uncharacterized protein.	0.416
H2ZV75_LATCH	H2ZX62_LATCH	ENSLACP00000001296	ENSLACP00000001983	Uncharacterized protein.	Uncharacterized protein.	0.452
H2ZV75_LATCH	H3A1Q4_LATCH	ENSLACP00000001296	ENSLACP00000003575	Uncharacterized protein.	Uncharacterized protein.	0.400
H2ZV75_LATCH	H3A711_LATCH	ENSLACP00000001296	ENSLACP00000005432	Uncharacterized protein.	Uncharacterized protein.	0.420
H2ZV75_LATCH	H3ABK8_LATCH	ENSLACP00000001296	ENSLACP00000007029	Uncharacterized protein.	DUF4371 domain-containing protein.	0.412
H2ZV75_LATCH	H3BGZ2_LATCH	ENSLACP00000001296	ENSLACP00000021163	Uncharacterized protein.	Uncharacterized protein.	0.480