(7 nodes) EPM2A-interacting protein 1/ZBED8-like network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2ZWP1_LATCH	Dimer_Tnp_hAT domain-containing protein. (525 aa)
	H3A536_LATCH	Uncharacterized protein. (167 aa)
	H3A5S5_LATCH	Dimer_Tnp_hAT domain-containing protein. (229 aa)
	H3AE60_LATCH	Uncharacterized protein. (550 aa)
	H3AFK5_LATCH	Uncharacterized protein. (474 aa)
	H3ARQ8_LATCH	Uncharacterized protein. (169 aa)
	H3AZA9_LATCH	Dimer_Tnp_hAT domain-containing protein. (620 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZWP1_LATCH	H3ARQ8_LATCH	ENSLACP00000001812	ENSLACP00000012329	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.423
H3A536_LATCH	H3A5S5_LATCH	ENSLACP00000004757	ENSLACP00000004996	Uncharacterized protein.	Dimer_Tnp_hAT domain-containing protein.	0.474
H3A536_LATCH	H3AE60_LATCH	ENSLACP00000004757	ENSLACP00000007931	Uncharacterized protein.	Uncharacterized protein.	0.482
H3A536_LATCH	H3AZA9_LATCH	ENSLACP00000004757	ENSLACP00000014980	Uncharacterized protein.	Dimer_Tnp_hAT domain-containing protein.	0.406
H3A5S5_LATCH	H3A536_LATCH	ENSLACP00000004996	ENSLACP00000004757	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.474
H3AE60_LATCH	H3A536_LATCH	ENSLACP00000007931	ENSLACP00000004757	Uncharacterized protein.	Uncharacterized protein.	0.482
H3ARQ8_LATCH	H2ZWP1_LATCH	ENSLACP00000012329	ENSLACP00000001812	Uncharacterized protein.	Dimer_Tnp_hAT domain-containing protein.	0.423
H3AZA9_LATCH	H3A536_LATCH	ENSLACP00000014980	ENSLACP00000004757	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.406