(5 nodes) Egg coat network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102346338	ZP domain-containing protein. (328 aa)
	H3A575_LATCH	Uncharacterized protein. (388 aa)
	LOC102359505	ZP domain-containing protein. (965 aa)
	H3AHA9_LATCH	Uncharacterized protein. (348 aa)
	LOC102359022	Chitin-binding type-2 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (461 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3A575_LATCH	LOC102346338	ENSLACP00000004796	ENSLACP00000002084	Uncharacterized protein.	ZP domain-containing protein.	0.543
H3AHA9_LATCH	LOC102346338	ENSLACP00000009030	ENSLACP00000002084	Uncharacterized protein.	ZP domain-containing protein.	0.543
LOC102346338	H3A575_LATCH	ENSLACP00000002084	ENSLACP00000004796	ZP domain-containing protein.	Uncharacterized protein.	0.543
LOC102346338	H3AHA9_LATCH	ENSLACP00000002084	ENSLACP00000009030	ZP domain-containing protein.	Uncharacterized protein.	0.543
LOC102346338	LOC102359022	ENSLACP00000002084	ENSLACP00000016513	ZP domain-containing protein.	Chitin-binding type-2 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.553
LOC102346338	LOC102359505	ENSLACP00000002084	ENSLACP00000007371	ZP domain-containing protein.	ZP domain-containing protein.	0.543
LOC102359022	LOC102346338	ENSLACP00000016513	ENSLACP00000002084	Chitin-binding type-2 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	ZP domain-containing protein.	0.553
LOC102359505	LOC102346338	ENSLACP00000007371	ENSLACP00000002084	ZP domain-containing protein.	ZP domain-containing protein.	0.543