(36 nodes) Collagen chain trimerization, and Glycosyl transferase family 2 network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COL9A1	LAM_G_DOMAIN domain-containing protein. (442 aa)
	H2ZVD4_LATCH	Uncharacterized protein. (633 aa)
	H3A5M4_LATCH	C1q domain-containing protein. (342 aa)
	H3A7E6_LATCH	Uncharacterized protein. (2128 aa)
	H3A7Y1_LATCH	LAM_G_DOMAIN domain-containing protein. (865 aa)
	PLOD3	P4Hc domain-containing protein. (758 aa)
	COL3A1	Uncharacterized protein. (1467 aa)
	COL22A1	VWFA domain-containing protein. (212 aa)
	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1. (775 aa)
	COL18A1	LAM_G_DOMAIN domain-containing protein. (1308 aa)
	COLGALT1	Collagen beta(1-O)galactosyltransferase 1. (619 aa)
	COL4A5	Collagen, type IV, alpha 5 (Alport syndrome). (1646 aa)
	COL24A1	LAM_G_DOMAIN domain-containing protein. (456 aa)
	COL11A1	Fibrillar collagen NC1 domain-containing protein. (751 aa)
	SCARA3	Scavenger receptor class A member 3. (568 aa)
	H3AP77_LATCH	Endostatin domain-containing protein. (188 aa)
	LOC102351167	Zmp:0000000760. (736 aa)
	C1QTNF2	C1q and TNF related 2. (297 aa)
	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2. (737 aa)
	H3AT52_LATCH	Fibrillar collagen NC1 domain-containing protein. (745 aa)
	H3ATS1_LATCH	Uncharacterized protein. (1079 aa)
	COL23A1	Uncharacterized protein. (409 aa)
	PCOLCE2	Procollagen C-endopeptidase enhancer 2. (471 aa)
	C1QTNF7	C1q and TNF related 7. (291 aa)
	H3B002_LATCH	C1q and TNF related 9. (336 aa)
	COLGALT2	Collagen beta(1-O)galactosyltransferase 2. (541 aa)
	H3B3F9_LATCH	Fibrillar collagen NC1 domain-containing protein. (1316 aa)
	COL27A1	Collagen, type XXVII, alpha 1b. (1269 aa)
	COLEC12	Collectin subfamily member 12. (734 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (719 aa)
	CERCAM	Cerebral endothelial cell adhesion molecule. (609 aa)
	COL8A2	Collagen type VIII alpha 2 chain. (638 aa)
	H3BF85_LATCH	Uncharacterized protein. (321 aa)
	LOC102357431	Uncharacterized protein. (397 aa)
	EMID1	EMI domain-containing protein. (367 aa)
	LOC102351297	Uncharacterized protein. (154 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1QTNF2	COL8A1	ENSLACP00000011969	ENSLACP00000017712	C1q and TNF related 2.	Collagen type VIII alpha 1 chain.	0.418
C1QTNF2	H3ATS1_LATCH	ENSLACP00000011969	ENSLACP00000013042	C1q and TNF related 2.	Uncharacterized protein.	0.459
C1QTNF7	COL8A1	ENSLACP00000014458	ENSLACP00000017712	C1q and TNF related 7.	Collagen type VIII alpha 1 chain.	0.410
C1QTNF7	H3ATS1_LATCH	ENSLACP00000014458	ENSLACP00000013042	C1q and TNF related 7.	Uncharacterized protein.	0.465
CERCAM	COL8A1	ENSLACP00000019096	ENSLACP00000017712	Cerebral endothelial cell adhesion molecule.	Collagen type VIII alpha 1 chain.	0.455
CERCAM	COLGALT1	ENSLACP00000019096	ENSLACP00000007902	Cerebral endothelial cell adhesion molecule.	Collagen beta(1-O)galactosyltransferase 1.	0.902
CERCAM	COLGALT2	ENSLACP00000019096	ENSLACP00000015449	Cerebral endothelial cell adhesion molecule.	Collagen beta(1-O)galactosyltransferase 2.	0.901
CERCAM	H3ATS1_LATCH	ENSLACP00000019096	ENSLACP00000013042	Cerebral endothelial cell adhesion molecule.	Uncharacterized protein.	0.401
CERCAM	PLOD1	ENSLACP00000019096	ENSLACP00000006384	Cerebral endothelial cell adhesion molecule.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	0.961
CERCAM	PLOD2	ENSLACP00000019096	ENSLACP00000012040	Cerebral endothelial cell adhesion molecule.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.	0.954
CERCAM	PLOD3	ENSLACP00000019096	ENSLACP00000005839	Cerebral endothelial cell adhesion molecule.	P4Hc domain-containing protein.	0.559
COL11A1	COL24A1	ENSLACP00000010118	ENSLACP00000009081	Fibrillar collagen NC1 domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.497
COL11A1	EMID1	ENSLACP00000010118	ENSLACP00000022649	Fibrillar collagen NC1 domain-containing protein.	EMI domain-containing protein.	0.420
COL11A1	H3AP77_LATCH	ENSLACP00000010118	ENSLACP00000011448	Fibrillar collagen NC1 domain-containing protein.	Endostatin domain-containing protein.	0.901
COL11A1	H3ATS1_LATCH	ENSLACP00000010118	ENSLACP00000013042	Fibrillar collagen NC1 domain-containing protein.	Uncharacterized protein.	0.412
COL11A1	LOC102357431	ENSLACP00000010118	ENSLACP00000021839	Fibrillar collagen NC1 domain-containing protein.	Uncharacterized protein.	0.419
COL11A1	PCOLCE2	ENSLACP00000010118	ENSLACP00000013609	Fibrillar collagen NC1 domain-containing protein.	Procollagen C-endopeptidase enhancer 2.	0.407
COL18A1	COL4A5	ENSLACP00000007639	ENSLACP00000008892	LAM_G_DOMAIN domain-containing protein.	Collagen, type IV, alpha 5 (Alport syndrome).	0.416
COL18A1	COL8A1	ENSLACP00000007639	ENSLACP00000017712	LAM_G_DOMAIN domain-containing protein.	Collagen type VIII alpha 1 chain.	0.402
COL18A1	PLOD1	ENSLACP00000007639	ENSLACP00000006384	LAM_G_DOMAIN domain-containing protein.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	0.479