(26 nodes) Mixed, incl. BBSome, and Fatty acid transmembrane transporter activity network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BBS12	Bardet-Biedl syndrome 12. (709 aa)
	LZTFL1	Leucine zipper transcription factor like 1. (263 aa)
	BBS4	Bardet-Biedl syndrome 4. (537 aa)
	BBS7	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (715 aa)
	KLHL4	Kelch like family member 4. (590 aa)
	LOC102350161	Uncharacterized protein. (620 aa)
	H3A179_LATCH	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (759 aa)
	KLHL5	Kelch like family member 5. (751 aa)
	H3A6Z7_LATCH	Bardet-Biedl syndrome 1. (596 aa)
	KLHL40	Kelch like family member 40. (599 aa)
	BBS9	Bardet-Biedl syndrome 9. (707 aa)
	KIFC1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (637 aa)
	H3AG51_LATCH	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (676 aa)
	TTC24	Tetratricopeptide repeat domain 24. (395 aa)
	KIFC2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (719 aa)
	H3APE8_LATCH	Uncharacterized protein. (135 aa)
	H3APS9_LATCH	TPR_REGION domain-containing protein. (390 aa)
	BBS5	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family. (342 aa)
	KLHL41	Kelch like family member 41. (596 aa)
	KLHL1	Kelch like family member 1. (411 aa)
	BBIP1-2	BBSome interacting protein 1. (71 aa)
	BBS2	Bardet-Biedl syndrome 2 protein homolog. (724 aa)
	SLC27A4	Solute carrier family 27 member 4. (654 aa)
	SLC27A2	Solute carrier family 27 member 2. (619 aa)
	BBS9-2	PHTB1_C domain-containing protein. (186 aa)
	TTC8	Tetratricopeptide repeat domain 8. (534 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBIP1-2	BBS12	ENSLACP00000015551	ENSLACP00000001386	BBSome interacting protein 1.	Bardet-Biedl syndrome 12.	0.544
BBIP1-2	BBS2	ENSLACP00000015551	ENSLACP00000017026	BBSome interacting protein 1.	Bardet-Biedl syndrome 2 protein homolog.	0.881
BBIP1-2	BBS4	ENSLACP00000015551	ENSLACP00000002102	BBSome interacting protein 1.	Bardet-Biedl syndrome 4.	0.601
BBIP1-2	BBS5	ENSLACP00000015551	ENSLACP00000013671	BBSome interacting protein 1.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.608
BBIP1-2	BBS7	ENSLACP00000015551	ENSLACP00000002676	BBSome interacting protein 1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.905
BBIP1-2	BBS9	ENSLACP00000015551	ENSLACP00000007483	BBSome interacting protein 1.	Bardet-Biedl syndrome 9.	0.881
BBIP1-2	BBS9-2	ENSLACP00000015551	ENSLACP00000022559	BBSome interacting protein 1.	PHTB1_C domain-containing protein.	0.803
BBIP1-2	H3A179_LATCH	ENSLACP00000015551	ENSLACP00000003400	BBSome interacting protein 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.543
BBIP1-2	H3A6Z7_LATCH	ENSLACP00000015551	ENSLACP00000005418	BBSome interacting protein 1.	Bardet-Biedl syndrome 1.	0.885
BBIP1-2	H3AG51_LATCH	ENSLACP00000015551	ENSLACP00000008622	BBSome interacting protein 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.543
BBIP1-2	KIFC1	ENSLACP00000015551	ENSLACP00000007833	BBSome interacting protein 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.543
BBIP1-2	KIFC2	ENSLACP00000015551	ENSLACP00000010551	BBSome interacting protein 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.543
BBIP1-2	KLHL40	ENSLACP00000015551	ENSLACP00000006698	BBSome interacting protein 1.	Kelch like family member 40.	0.407
BBIP1-2	KLHL41	ENSLACP00000015551	ENSLACP00000013868	BBSome interacting protein 1.	Kelch like family member 41.	0.413
BBIP1-2	LOC102350161	ENSLACP00000015551	ENSLACP00000003212	BBSome interacting protein 1.	Uncharacterized protein.	0.524
BBIP1-2	LZTFL1	ENSLACP00000015551	ENSLACP00000001505	BBSome interacting protein 1.	Leucine zipper transcription factor like 1.	0.418
BBIP1-2	SLC27A2	ENSLACP00000015551	ENSLACP00000020679	BBSome interacting protein 1.	Solute carrier family 27 member 2.	0.524
BBIP1-2	SLC27A4	ENSLACP00000015551	ENSLACP00000019407	BBSome interacting protein 1.	Solute carrier family 27 member 4.	0.524
BBIP1-2	TTC8	ENSLACP00000015551	ENSLACP00000022744	BBSome interacting protein 1.	Tetratricopeptide repeat domain 8.	0.895
BBS12	BBIP1-2	ENSLACP00000001386	ENSLACP00000015551	Bardet-Biedl syndrome 12.	BBSome interacting protein 1.	0.544