(6 nodes) Starch binding, and Fibronectin type III and SPRY containing 1, PRY/SPRY domain network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2ZSK8_LATCH	TYR_PHOSPHATASE_2 domain-containing protein. (101 aa)
	FSD1L	Fibronectin type III and SPRY domain containing 1 like. (498 aa)
	EPM2A	EPM2A glucan phosphatase, laforin. (228 aa)
	NHLRC1	NHL repeat containing E3 ubiquitin protein ligase 1. (397 aa)
	FSD2	Fibronectin type III and SPRY domain containing 2. (859 aa)
	M3XJQ7_LATCH	CBM20 domain-containing protein. (180 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPM2A	H2ZSK8_LATCH	ENSLACP00000004885	ENSLACP00000000379	EPM2A glucan phosphatase, laforin.	TYR_PHOSPHATASE_2 domain-containing protein.	0.921
EPM2A	M3XJQ7_LATCH	ENSLACP00000004885	ENSLACP00000022963	EPM2A glucan phosphatase, laforin.	CBM20 domain-containing protein.	0.588
EPM2A	NHLRC1	ENSLACP00000004885	ENSLACP00000005860	EPM2A glucan phosphatase, laforin.	NHL repeat containing E3 ubiquitin protein ligase 1.	0.799
FSD1L	NHLRC1	ENSLACP00000003165	ENSLACP00000005860	Fibronectin type III and SPRY domain containing 1 like.	NHL repeat containing E3 ubiquitin protein ligase 1.	0.669
FSD2	NHLRC1	ENSLACP00000020440	ENSLACP00000005860	Fibronectin type III and SPRY domain containing 2.	NHL repeat containing E3 ubiquitin protein ligase 1.	0.669
H2ZSK8_LATCH	EPM2A	ENSLACP00000000379	ENSLACP00000004885	TYR_PHOSPHATASE_2 domain-containing protein.	EPM2A glucan phosphatase, laforin.	0.921
H2ZSK8_LATCH	M3XJQ7_LATCH	ENSLACP00000000379	ENSLACP00000022963	TYR_PHOSPHATASE_2 domain-containing protein.	CBM20 domain-containing protein.	0.588
H2ZSK8_LATCH	NHLRC1	ENSLACP00000000379	ENSLACP00000005860	TYR_PHOSPHATASE_2 domain-containing protein.	NHL repeat containing E3 ubiquitin protein ligase 1.	0.799
M3XJQ7_LATCH	EPM2A	ENSLACP00000022963	ENSLACP00000004885	CBM20 domain-containing protein.	EPM2A glucan phosphatase, laforin.	0.588
M3XJQ7_LATCH	H2ZSK8_LATCH	ENSLACP00000022963	ENSLACP00000000379	CBM20 domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.588
NHLRC1	EPM2A	ENSLACP00000005860	ENSLACP00000004885	NHL repeat containing E3 ubiquitin protein ligase 1.	EPM2A glucan phosphatase, laforin.	0.799
NHLRC1	FSD1L	ENSLACP00000005860	ENSLACP00000003165	NHL repeat containing E3 ubiquitin protein ligase 1.	Fibronectin type III and SPRY domain containing 1 like.	0.669
NHLRC1	FSD2	ENSLACP00000005860	ENSLACP00000020440	NHL repeat containing E3 ubiquitin protein ligase 1.	Fibronectin type III and SPRY domain containing 2.	0.669
NHLRC1	H2ZSK8_LATCH	ENSLACP00000005860	ENSLACP00000000379	NHL repeat containing E3 ubiquitin protein ligase 1.	TYR_PHOSPHATASE_2 domain-containing protein.	0.799