(5 nodes) Positive regulation of metallopeptidase activity, and Hyperosmotic salinity response network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102348856	Uncharacterized protein. (190 aa)
	LOC102348536	Uncharacterized protein. (184 aa)
	CLDN1	Claudin 1. (210 aa)
	LOC102360103	Uncharacterized protein. (172 aa)
	LOC102352367	Uncharacterized protein. (188 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLDN1	LOC102348536	ENSLACP00000017569	ENSLACP00000004957	Claudin 1.	Uncharacterized protein.	0.774
CLDN1	LOC102348856	ENSLACP00000017569	ENSLACP00000004079	Claudin 1.	Uncharacterized protein.	0.775
CLDN1	LOC102352367	ENSLACP00000017569	ENSLACP00000022365	Claudin 1.	Uncharacterized protein.	0.685
CLDN1	LOC102360103	ENSLACP00000017569	ENSLACP00000022309	Claudin 1.	Uncharacterized protein.	0.667
LOC102348536	CLDN1	ENSLACP00000004957	ENSLACP00000017569	Uncharacterized protein.	Claudin 1.	0.774
LOC102348536	LOC102348856	ENSLACP00000004957	ENSLACP00000004079	Uncharacterized protein.	Uncharacterized protein.	0.653
LOC102348536	LOC102352367	ENSLACP00000004957	ENSLACP00000022365	Uncharacterized protein.	Uncharacterized protein.	0.829
LOC102348536	LOC102360103	ENSLACP00000004957	ENSLACP00000022309	Uncharacterized protein.	Uncharacterized protein.	0.772
LOC102348856	CLDN1	ENSLACP00000004079	ENSLACP00000017569	Uncharacterized protein.	Claudin 1.	0.775
LOC102348856	LOC102348536	ENSLACP00000004079	ENSLACP00000004957	Uncharacterized protein.	Uncharacterized protein.	0.653
LOC102348856	LOC102352367	ENSLACP00000004079	ENSLACP00000022365	Uncharacterized protein.	Uncharacterized protein.	0.829
LOC102348856	LOC102360103	ENSLACP00000004079	ENSLACP00000022309	Uncharacterized protein.	Uncharacterized protein.	0.687
LOC102352367	CLDN1	ENSLACP00000022365	ENSLACP00000017569	Uncharacterized protein.	Claudin 1.	0.685
LOC102352367	LOC102348536	ENSLACP00000022365	ENSLACP00000004957	Uncharacterized protein.	Uncharacterized protein.	0.829
LOC102352367	LOC102348856	ENSLACP00000022365	ENSLACP00000004079	Uncharacterized protein.	Uncharacterized protein.	0.829
LOC102352367	LOC102360103	ENSLACP00000022365	ENSLACP00000022309	Uncharacterized protein.	Uncharacterized protein.	0.783
LOC102360103	CLDN1	ENSLACP00000022309	ENSLACP00000017569	Uncharacterized protein.	Claudin 1.	0.667
LOC102360103	LOC102348536	ENSLACP00000022309	ENSLACP00000004957	Uncharacterized protein.	Uncharacterized protein.	0.772
LOC102360103	LOC102348856	ENSLACP00000022309	ENSLACP00000004079	Uncharacterized protein.	Uncharacterized protein.	0.687
LOC102360103	LOC102352367	ENSLACP00000022309	ENSLACP00000022365	Uncharacterized protein.	Uncharacterized protein.	0.783