(22 nodes) Zinc ion transport network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2ZSX6_LATCH	Uncharacterized protein. (179 aa)
	H2ZUD5_LATCH	Uncharacterized protein. (396 aa)
	H2ZUM9_LATCH	ZIP4_domain domain-containing protein. (302 aa)
	SLC39A9	Solute carrier family 39 member 9. (303 aa)
	SLC39A14	Solute carrier family 39 member 14. (501 aa)
	SLC30A9	Solute carrier family 30 member 9. (561 aa)
	H3A3J3_LATCH	Uncharacterized protein. (564 aa)
	H3A5S6_LATCH	Uncharacterized protein. (304 aa)
	SLC30A5	Solute carrier family 30 member 5. (768 aa)
	SLC39A1	Solute carrier family 39 member 1. (340 aa)
	SLC30A3	Solute carrier family 30 member 2. (373 aa)
	SLC39A6	Solute carrier family 39 member 6. (742 aa)
	SLC39A7	Solute carrier family 39 member 7. (450 aa)
	SLC30A7	Solute carrier family 30 member 7. (382 aa)
	SLC30A6	Solute carrier family 30 member 6. (531 aa)
	H3ATX3_LATCH	Uncharacterized protein. (199 aa)
	SLC30A1	Solute carrier family 30 member 1. (518 aa)
	SLC30A8	Uncharacterized protein. (190 aa)
	SLC30A4	Solute carrier family 30 member 4. (421 aa)
	SLC30A2	Solute carrier family 30 member 2. (369 aa)
	SLC39A11	Uncharacterized protein. (53 aa)
	LOC102362796	Uncharacterized protein. (451 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZSX6_LATCH	SLC30A4	ENSLACP00000000497	ENSLACP00000017774	Uncharacterized protein.	Solute carrier family 30 member 4.	0.509
H2ZSX6_LATCH	SLC30A6	ENSLACP00000000497	ENSLACP00000012328	Uncharacterized protein.	Solute carrier family 30 member 6.	0.470
H2ZSX6_LATCH	SLC39A1	ENSLACP00000000497	ENSLACP00000006757	Uncharacterized protein.	Solute carrier family 39 member 1.	0.538
H2ZUD5_LATCH	SLC30A4	ENSLACP00000001006	ENSLACP00000017774	Uncharacterized protein.	Solute carrier family 30 member 4.	0.416
H2ZUD5_LATCH	SLC30A7	ENSLACP00000001006	ENSLACP00000008568	Uncharacterized protein.	Solute carrier family 30 member 7.	0.409
H2ZUM9_LATCH	SLC30A4	ENSLACP00000001100	ENSLACP00000017774	ZIP4_domain domain-containing protein.	Solute carrier family 30 member 4.	0.509
H2ZUM9_LATCH	SLC30A6	ENSLACP00000001100	ENSLACP00000012328	ZIP4_domain domain-containing protein.	Solute carrier family 30 member 6.	0.470
H2ZUM9_LATCH	SLC39A1	ENSLACP00000001100	ENSLACP00000006757	ZIP4_domain domain-containing protein.	Solute carrier family 39 member 1.	0.538
H3A3J3_LATCH	SLC30A4	ENSLACP00000004214	ENSLACP00000017774	Uncharacterized protein.	Solute carrier family 30 member 4.	0.475
H3A5S6_LATCH	SLC30A4	ENSLACP00000004997	ENSLACP00000017774	Uncharacterized protein.	Solute carrier family 30 member 4.	0.428
H3A5S6_LATCH	SLC30A5	ENSLACP00000004997	ENSLACP00000006725	Uncharacterized protein.	Solute carrier family 30 member 5.	0.482
H3A5S6_LATCH	SLC30A6	ENSLACP00000004997	ENSLACP00000012328	Uncharacterized protein.	Solute carrier family 30 member 6.	0.450
H3A5S6_LATCH	SLC30A7	ENSLACP00000004997	ENSLACP00000008568	Uncharacterized protein.	Solute carrier family 30 member 7.	0.508
H3A5S6_LATCH	SLC30A9	ENSLACP00000004997	ENSLACP00000003725	Uncharacterized protein.	Solute carrier family 30 member 9.	0.497
H3A5S6_LATCH	SLC39A11	ENSLACP00000004997	ENSLACP00000021094	Uncharacterized protein.	Uncharacterized protein.	0.532
H3A5S6_LATCH	SLC39A7	ENSLACP00000004997	ENSLACP00000008296	Uncharacterized protein.	Solute carrier family 39 member 7.	0.544
H3ATX3_LATCH	SLC30A8	ENSLACP00000013094	ENSLACP00000017636	Uncharacterized protein.	Uncharacterized protein.	0.575
H3ATX3_LATCH	SLC39A11	ENSLACP00000013094	ENSLACP00000021094	Uncharacterized protein.	Uncharacterized protein.	0.431
H3ATX3_LATCH	SLC39A7	ENSLACP00000013094	ENSLACP00000008296	Uncharacterized protein.	Solute carrier family 39 member 7.	0.405
LOC102362796	SLC30A2	ENSLACP00000021986	ENSLACP00000018527	Uncharacterized protein.	Solute carrier family 30 member 2.	0.550