(5 nodes) Tryptophan transport, and Axolemma network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3A9B7_LATCH	Uncharacterized protein. (521 aa)
	SLC7A11	Solute carrier family 7 member 11. (501 aa)
	SLC1A2	Amino acid transporter. (566 aa)
	SLC7A5	Solute carrier family 7 member 5. (522 aa)
	LOC102352322	Aamy domain-containing protein. (520 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3A9B7_LATCH	SLC1A2	ENSLACP00000006238	ENSLACP00000013672	Uncharacterized protein.	Amino acid transporter.	0.602
H3A9B7_LATCH	SLC7A11	ENSLACP00000006238	ENSLACP00000010600	Uncharacterized protein.	Solute carrier family 7 member 11.	0.968
H3A9B7_LATCH	SLC7A5	ENSLACP00000006238	ENSLACP00000016597	Uncharacterized protein.	Solute carrier family 7 member 5.	0.975
LOC102352322	SLC1A2	ENSLACP00000023504	ENSLACP00000013672	Aamy domain-containing protein.	Amino acid transporter.	0.498
LOC102352322	SLC7A11	ENSLACP00000023504	ENSLACP00000010600	Aamy domain-containing protein.	Solute carrier family 7 member 11.	0.996
LOC102352322	SLC7A5	ENSLACP00000023504	ENSLACP00000016597	Aamy domain-containing protein.	Solute carrier family 7 member 5.	0.997
SLC1A2	H3A9B7_LATCH	ENSLACP00000013672	ENSLACP00000006238	Amino acid transporter.	Uncharacterized protein.	0.602
SLC1A2	LOC102352322	ENSLACP00000013672	ENSLACP00000023504	Amino acid transporter.	Aamy domain-containing protein.	0.498
SLC1A2	SLC7A5	ENSLACP00000013672	ENSLACP00000016597	Amino acid transporter.	Solute carrier family 7 member 5.	0.656
SLC7A11	H3A9B7_LATCH	ENSLACP00000010600	ENSLACP00000006238	Solute carrier family 7 member 11.	Uncharacterized protein.	0.968
SLC7A11	LOC102352322	ENSLACP00000010600	ENSLACP00000023504	Solute carrier family 7 member 11.	Aamy domain-containing protein.	0.996
SLC7A5	H3A9B7_LATCH	ENSLACP00000016597	ENSLACP00000006238	Solute carrier family 7 member 5.	Uncharacterized protein.	0.975
SLC7A5	LOC102352322	ENSLACP00000016597	ENSLACP00000023504	Solute carrier family 7 member 5.	Aamy domain-containing protein.	0.997
SLC7A5	SLC1A2	ENSLACP00000016597	ENSLACP00000013672	Solute carrier family 7 member 5.	Amino acid transporter.	0.656