(30 nodes) Mixed, incl. N-acetylgalactosamine 4-O-sulfotransferase activity, and MAM domain network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2ZS74_LATCH	Carbohydrate sulfotransferase. (255 aa)
	H2ZUM8_LATCH	Carbohydrate sulfotransferase. (251 aa)
	H2ZVB9_LATCH	Carbohydrate sulfotransferase. (274 aa)
	FOXQ1	Forkhead box Q1. (329 aa)
	C1QTNF6	C1q and TNF related 6. (273 aa)
	H2ZWY0_LATCH	Uncharacterized protein. (156 aa)
	H2ZY35_LATCH	Uncharacterized protein. (349 aa)
	H2ZYM7_LATCH	Carbohydrate sulfotransferase. (217 aa)
	H2ZZ13_LATCH	Uncharacterized protein. (353 aa)
	MAMDC4	Uncharacterized protein. (1157 aa)
	H3A3F7_LATCH	Carbohydrate sulfotransferase. (264 aa)
	ZBTB7C	Zinc finger and BTB domain containing 7C. (581 aa)
	MALRD1	MAM and LDL receptor class A domain containing 1. (1285 aa)
	MALRD1-2	Uncharacterized protein. (274 aa)
	H3B3Q2_LATCH	Uncharacterized protein. (553 aa)
	H3B4N7_LATCH	Uncharacterized protein. (343 aa)
	LOC102352665	Hippocalcin like 4. (192 aa)
	H3B7L4_LATCH	DDE Tnp4 domain-containing protein. (309 aa)
	PGPEP1	Pyroglutamyl-peptidase I. (256 aa)
	NPTN	Neuroplastin. (346 aa)
	TESK2	Protein kinase domain-containing protein. (555 aa)
	C1QTNF1	C1q and TNF related 1. (229 aa)
	LRRC25	Uncharacterized protein. (240 aa)
	FAM78A	Family with sequence similarity 78 member A. (282 aa)
	H3BF51_LATCH	Uncharacterized protein. (492 aa)
	LOC102351646	Si:dkey-165a24.9; Belongs to the G-protein coupled receptor 1 family. (317 aa)
	H3BHC2_LATCH	Cerebellin 18. (170 aa)
	H3BHD2_LATCH	C1q domain-containing protein. (185 aa)
	IQCM	Uncharacterized protein. (656 aa)
	FAM166A	Uncharacterized protein. (292 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM78A	H3BHC2_LATCH	ENSLACP00000019484	ENSLACP00000021293	Family with sequence similarity 78 member A.	Cerebellin 18.	0.454
FOXQ1	LOC102352665	ENSLACP00000001450	ENSLACP00000016902	Forkhead box Q1.	Hippocalcin like 4.	0.549
H3B3Q2_LATCH	MALRD1-2	ENSLACP00000016523	ENSLACP00000014707	Uncharacterized protein.	Uncharacterized protein.	0.825
H3BHC2_LATCH	FAM78A	ENSLACP00000021293	ENSLACP00000019484	Cerebellin 18.	Family with sequence similarity 78 member A.	0.454
LOC102352665	FOXQ1	ENSLACP00000016902	ENSLACP00000001450	Hippocalcin like 4.	Forkhead box Q1.	0.549
LRRC25	PGPEP1	ENSLACP00000018549	ENSLACP00000018069	Uncharacterized protein.	Pyroglutamyl-peptidase I.	0.743
MALRD1-2	H3B3Q2_LATCH	ENSLACP00000014707	ENSLACP00000016523	Uncharacterized protein.	Uncharacterized protein.	0.825
PGPEP1	LRRC25	ENSLACP00000018069	ENSLACP00000018549	Pyroglutamyl-peptidase I.	Uncharacterized protein.	0.743