(10 nodes) EMC complex network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EMC9	ER membrane protein complex subunit 9. (208 aa)
	EMC6	ER membrane protein complex subunit 6. (112 aa)
	EMC8	ER membrane protein complex subunit 8. (204 aa)
	EMC2	ER membrane protein complex subunit 2. (297 aa)
	LOC102352461	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (260 aa)
	EMC4	ER membrane protein complex subunit 4; Belongs to the EMC4 family. (175 aa)
	EMC10	ER membrane protein complex subunit 10. (253 aa)
	MMGT1	Membrane magnesium transporter 1. (131 aa)
	EMC3	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (261 aa)
	EMC1	ER membrane protein complex subunit 1. (955 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EMC1	EMC10	ENSLACP00000021798	ENSLACP00000018058	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 10.	0.971
EMC1	EMC2	ENSLACP00000021798	ENSLACP00000005513	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 2.	0.999
EMC1	EMC3	ENSLACP00000021798	ENSLACP00000020953	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.958
EMC1	EMC4	ENSLACP00000021798	ENSLACP00000006641	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.999
EMC1	EMC6	ENSLACP00000021798	ENSLACP00000003225	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 6.	0.982
EMC1	EMC8	ENSLACP00000021798	ENSLACP00000003498	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 8.	0.969
EMC1	EMC9	ENSLACP00000021798	ENSLACP00000002397	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 9.	0.956
EMC1	LOC102352461	ENSLACP00000021798	ENSLACP00000005796	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.930
EMC1	MMGT1	ENSLACP00000021798	ENSLACP00000019209	ER membrane protein complex subunit 1.	Membrane magnesium transporter 1.	0.980
EMC10	EMC1	ENSLACP00000018058	ENSLACP00000021798	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 1.	0.971
EMC10	EMC2	ENSLACP00000018058	ENSLACP00000005513	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 2.	0.970
EMC10	EMC3	ENSLACP00000018058	ENSLACP00000020953	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.967
EMC10	EMC4	ENSLACP00000018058	ENSLACP00000006641	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.967
EMC10	EMC6	ENSLACP00000018058	ENSLACP00000003225	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 6.	0.952
EMC10	EMC8	ENSLACP00000018058	ENSLACP00000003498	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 8.	0.946
EMC10	EMC9	ENSLACP00000018058	ENSLACP00000002397	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 9.	0.936
EMC10	LOC102352461	ENSLACP00000018058	ENSLACP00000005796	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.907
EMC10	MMGT1	ENSLACP00000018058	ENSLACP00000019209	ER membrane protein complex subunit 10.	Membrane magnesium transporter 1.	0.958
EMC2	EMC1	ENSLACP00000005513	ENSLACP00000021798	ER membrane protein complex subunit 2.	ER membrane protein complex subunit 1.	0.999
EMC2	EMC10	ENSLACP00000005513	ENSLACP00000018058	ER membrane protein complex subunit 2.	ER membrane protein complex subunit 10.	0.970