(10 nodes) Mixed, incl. SPARC/Testican, calcium-binding domain, and Testis development-related protein network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SIPA1L1	Signal induced proliferation associated 1 like 1. (1414 aa)
	PRKD2	Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. (831 aa)
	FBXO38	F-box protein 38. (1193 aa)
	TDRP	Testis development related protein. (193 aa)
	H3ARZ0_LATCH	Kazal-like domain-containing protein. (65 aa)
	C16orf58	Chromosome 16 open reading frame 58. (480 aa)
	SMOC2	Uncharacterized protein. (100 aa)
	CEBPZOS	CEBPZ opposite strand. (81 aa)
	H3BHA0_LATCH	Uncharacterized protein. (426 aa)
	MSANTD1	Myb/SANT DNA binding domain containing 1. (169 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FBXO38	H3ARZ0_LATCH	ENSLACP00000009400	ENSLACP00000012411	F-box protein 38.	Kazal-like domain-containing protein.	0.418
FBXO38	H3BHA0_LATCH	ENSLACP00000009400	ENSLACP00000021271	F-box protein 38.	Uncharacterized protein.	0.418
FBXO38	TDRP	ENSLACP00000009400	ENSLACP00000011202	F-box protein 38.	Testis development related protein.	0.699
H3ARZ0_LATCH	FBXO38	ENSLACP00000012411	ENSLACP00000009400	Kazal-like domain-containing protein.	F-box protein 38.	0.418
H3ARZ0_LATCH	TDRP	ENSLACP00000012411	ENSLACP00000011202	Kazal-like domain-containing protein.	Testis development related protein.	0.420
H3BHA0_LATCH	FBXO38	ENSLACP00000021271	ENSLACP00000009400	Uncharacterized protein.	F-box protein 38.	0.418
H3BHA0_LATCH	TDRP	ENSLACP00000021271	ENSLACP00000011202	Uncharacterized protein.	Testis development related protein.	0.420
PRKD2	SIPA1L1	ENSLACP00000005713	ENSLACP00000000601	Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.	Signal induced proliferation associated 1 like 1.	0.453
SIPA1L1	PRKD2	ENSLACP00000000601	ENSLACP00000005713	Signal induced proliferation associated 1 like 1.	Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.	0.453
SIPA1L1	SMOC2	ENSLACP00000000601	ENSLACP00000014368	Signal induced proliferation associated 1 like 1.	Uncharacterized protein.	0.542
SMOC2	SIPA1L1	ENSLACP00000014368	ENSLACP00000000601	Uncharacterized protein.	Signal induced proliferation associated 1 like 1.	0.542
TDRP	FBXO38	ENSLACP00000011202	ENSLACP00000009400	Testis development related protein.	F-box protein 38.	0.699
TDRP	H3ARZ0_LATCH	ENSLACP00000011202	ENSLACP00000012411	Testis development related protein.	Kazal-like domain-containing protein.	0.420
TDRP	H3BHA0_LATCH	ENSLACP00000011202	ENSLACP00000021271	Testis development related protein.	Uncharacterized protein.	0.420