(18 nodes) Organellar large ribosomal subunit network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MRPL16	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (251 aa)
	MRPL22	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (199 aa)
	MRPL36	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (115 aa)
	LOC102356981	Uncharacterized protein. (140 aa)
	MRPL46	Mitochondrial ribosomal protein L46. (188 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (164 aa)
	MRPL4	Mitochondrial ribosomal protein L4. (327 aa)
	MRPS14	Mitochondrial ribosomal protein S14. (143 aa)
	MRPL19	Mitochondrial ribosomal protein L19. (295 aa)
	MRPL23	Mitochondrial ribosomal protein L23. (163 aa)
	MRPL47	Mitochondrial ribosomal protein L47. (257 aa)
	MRPL41	Mitochondrial ribosomal protein L41. (135 aa)
	MRPL40	Mitochondrial ribosomal protein L40. (203 aa)
	MRPL17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (180 aa)
	MRPL13	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (175 aa)
	MRPL15	Mitochondrial ribosomal protein L15. (296 aa)
	MRPS12	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (160 aa)
	MRPL33	Mitochondrial ribosomal protein L33. (65 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102356981	MRPL13	ENSLACP00000005355	ENSLACP00000017559	Uncharacterized protein.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.999
LOC102356981	MRPL15	ENSLACP00000005355	ENSLACP00000018394	Uncharacterized protein.	Mitochondrial ribosomal protein L15.	0.999
LOC102356981	MRPL16	ENSLACP00000005355	ENSLACP00000002307	Uncharacterized protein.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.999
LOC102356981	MRPL17	ENSLACP00000005355	ENSLACP00000017389	Uncharacterized protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
LOC102356981	MRPL19	ENSLACP00000005355	ENSLACP00000011731	Uncharacterized protein.	Mitochondrial ribosomal protein L19.	0.999
LOC102356981	MRPL22	ENSLACP00000005355	ENSLACP00000003768	Uncharacterized protein.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.999
LOC102356981	MRPL23	ENSLACP00000005355	ENSLACP00000013087	Uncharacterized protein.	Mitochondrial ribosomal protein L23.	0.998
LOC102356981	MRPL33	ENSLACP00000005355	ENSLACP00000022902	Uncharacterized protein.	Mitochondrial ribosomal protein L33.	0.999
LOC102356981	MRPL36	ENSLACP00000005355	ENSLACP00000004937	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
LOC102356981	MRPL4	ENSLACP00000005355	ENSLACP00000010505	Uncharacterized protein.	Mitochondrial ribosomal protein L4.	0.999
LOC102356981	MRPL40	ENSLACP00000005355	ENSLACP00000017101	Uncharacterized protein.	Mitochondrial ribosomal protein L40.	0.995
LOC102356981	MRPL41	ENSLACP00000005355	ENSLACP00000017058	Uncharacterized protein.	Mitochondrial ribosomal protein L41.	0.998
LOC102356981	MRPL46	ENSLACP00000005355	ENSLACP00000008120	Uncharacterized protein.	Mitochondrial ribosomal protein L46.	0.998
LOC102356981	MRPL47	ENSLACP00000005355	ENSLACP00000016782	Uncharacterized protein.	Mitochondrial ribosomal protein L47.	0.998
LOC102356981	MRPL49	ENSLACP00000005355	ENSLACP00000008680	Uncharacterized protein.	Mitochondrial ribosomal protein L49.	0.997
LOC102356981	MRPS12	ENSLACP00000005355	ENSLACP00000020934	Uncharacterized protein.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.999
LOC102356981	MRPS14	ENSLACP00000005355	ENSLACP00000010823	Uncharacterized protein.	Mitochondrial ribosomal protein S14.	0.999
MRPL13	LOC102356981	ENSLACP00000017559	ENSLACP00000005355	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
MRPL13	MRPL15	ENSLACP00000017559	ENSLACP00000018394	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	Mitochondrial ribosomal protein L15.	0.999
MRPL13	MRPL16	ENSLACP00000017559	ENSLACP00000002307	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.999