(15 nodes) Mixed, incl. Nanos/Xcat2, and Translation activator activity network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2ZTK9_LATCH	Uncharacterized protein. (226 aa)
	H2ZX66_LATCH	Uncharacterized protein. (641 aa)
	DAZL	RRM domain-containing protein. (300 aa)
	LOC102359111	Nanos homolog 1; Belongs to the nanos family. (224 aa)
	PUM2	Pumilio RNA binding family member 2. (1203 aa)
	H3AR20_LATCH	Uncharacterized protein. (578 aa)
	NANOS3	Nanos C2HC-type zinc finger 3; Belongs to the nanos family. (146 aa)
	TENT2	Terminal nucleotidyltransferase 2. (496 aa)
	SFXN4	Sideroflexin 4. (318 aa)
	NANOS2	Nanos-type domain-containing protein; Belongs to the nanos family. (176 aa)
	NANOS1	Nanos C2HC-type zinc finger 1; Belongs to the nanos family. (213 aa)
	BOLL	Boule homolog, RNA binding protein. (344 aa)
	H3BA50_LATCH	Cytoplasmic polyadenylation element binding protein 1b. (486 aa)
	PUM1	Pumilio RNA binding family member 1. (1192 aa)
	DND1	DND microRNA-mediated repression inhibitor 1. (402 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOLL	H3BA50_LATCH	ENSLACP00000018009	ENSLACP00000018771	Boule homolog, RNA binding protein.	Cytoplasmic polyadenylation element binding protein 1b.	0.662
BOLL	PUM1	ENSLACP00000018009	ENSLACP00000019545	Boule homolog, RNA binding protein.	Pumilio RNA binding family member 1.	0.434
BOLL	PUM2	ENSLACP00000018009	ENSLACP00000009896	Boule homolog, RNA binding protein.	Pumilio RNA binding family member 2.	0.434
DAZL	DND1	ENSLACP00000003238	ENSLACP00000022386	RRM domain-containing protein.	DND microRNA-mediated repression inhibitor 1.	0.810
DAZL	H2ZX66_LATCH	ENSLACP00000003238	ENSLACP00000001987	RRM domain-containing protein.	Uncharacterized protein.	0.457
DAZL	H3AR20_LATCH	ENSLACP00000003238	ENSLACP00000012091	RRM domain-containing protein.	Uncharacterized protein.	0.529
DAZL	LOC102359111	ENSLACP00000003238	ENSLACP00000005818	RRM domain-containing protein.	Nanos homolog 1; Belongs to the nanos family.	0.711
DAZL	NANOS1	ENSLACP00000003238	ENSLACP00000017252	RRM domain-containing protein.	Nanos C2HC-type zinc finger 1; Belongs to the nanos family.	0.711
DAZL	NANOS2	ENSLACP00000003238	ENSLACP00000017010	RRM domain-containing protein.	Nanos-type domain-containing protein; Belongs to the nanos family.	0.781
DAZL	NANOS3	ENSLACP00000003238	ENSLACP00000015098	RRM domain-containing protein.	Nanos C2HC-type zinc finger 3; Belongs to the nanos family.	0.726
DAZL	PUM2	ENSLACP00000003238	ENSLACP00000009896	RRM domain-containing protein.	Pumilio RNA binding family member 2.	0.667
DND1	DAZL	ENSLACP00000022386	ENSLACP00000003238	DND microRNA-mediated repression inhibitor 1.	RRM domain-containing protein.	0.810
DND1	LOC102359111	ENSLACP00000022386	ENSLACP00000005818	DND microRNA-mediated repression inhibitor 1.	Nanos homolog 1; Belongs to the nanos family.	0.461
DND1	NANOS1	ENSLACP00000022386	ENSLACP00000017252	DND microRNA-mediated repression inhibitor 1.	Nanos C2HC-type zinc finger 1; Belongs to the nanos family.	0.461
DND1	NANOS2	ENSLACP00000022386	ENSLACP00000017010	DND microRNA-mediated repression inhibitor 1.	Nanos-type domain-containing protein; Belongs to the nanos family.	0.553
DND1	NANOS3	ENSLACP00000022386	ENSLACP00000015098	DND microRNA-mediated repression inhibitor 1.	Nanos C2HC-type zinc finger 3; Belongs to the nanos family.	0.699
H2ZTK9_LATCH	NANOS3	ENSLACP00000000730	ENSLACP00000015098	Uncharacterized protein.	Nanos C2HC-type zinc finger 3; Belongs to the nanos family.	0.451
H2ZX66_LATCH	DAZL	ENSLACP00000001987	ENSLACP00000003238	Uncharacterized protein.	RRM domain-containing protein.	0.457
H2ZX66_LATCH	NANOS2	ENSLACP00000001987	ENSLACP00000017010	Uncharacterized protein.	Nanos-type domain-containing protein; Belongs to the nanos family.	0.464
H2ZX66_LATCH	NANOS3	ENSLACP00000001987	ENSLACP00000015098	Uncharacterized protein.	Nanos C2HC-type zinc finger 3; Belongs to the nanos family.	0.428