STRINGSTRING
SRR SRR AGXT AGXT LOC102345272 LOC102345272 SDSL SDSL LOC102346076 LOC102346076 LOC102360660 LOC102360660 CBS CBS PSPH PSPH SHMT2 SHMT2 PHGDH PHGDH H3B0I4_LATCH H3B0I4_LATCH SHMT1 SHMT1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SRRSerine racemase. (337 aa)
AGXTSerine--pyruvate aminotransferase. (426 aa)
LOC102345272Phosphoserine aminotransferase. (368 aa)
SDSLSerine dehydratase like. (325 aa)
LOC102346076Aminotran_5 domain-containing protein. (349 aa)
LOC102360660Aminotran_5 domain-containing protein. (368 aa)
CBSCystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (563 aa)
PSPHPhosphoserine phosphatase. (248 aa)
SHMT2Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (542 aa)
PHGDHPhosphoglycerate dehydrogenase. (522 aa)
H3B0I4_LATCHSi:ch73-263o4.3. (320 aa)
SHMT1Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (474 aa)
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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