(3 nodes) Structural constituent of skin epidermis network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102348948	IF rod domain-containing protein; Belongs to the intermediate filament family. (548 aa)
	LOC102349393	IF rod domain-containing protein; Belongs to the intermediate filament family. (514 aa)
	LOC102350396	IF rod domain-containing protein; Belongs to the intermediate filament family. (577 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102348948	LOC102350396	ENSLACP00000020107	ENSLACP00000020278	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.493
LOC102349393	LOC102350396	ENSLACP00000020150	ENSLACP00000020278	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.491
LOC102350396	LOC102348948	ENSLACP00000020278	ENSLACP00000020107	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.493
LOC102350396	LOC102349393	ENSLACP00000020278	ENSLACP00000020150	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.491