STRINGSTRING
TRERF1 TRERF1 LOC102362765 LOC102362765 TGFB3 TGFB3 LOC102349421 LOC102349421 ABHD2 ABHD2 LOC102352268 LOC102352268 TGFB2 TGFB2 LOC102354684 LOC102354684 TGFB1 TGFB1 CAV3 CAV3 FOSL1 FOSL1 UBE3A UBE3A
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TRERF1Transcriptional regulating factor 1. (1190 aa)
LOC102362765Cytochrome P450, family 1, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (537 aa)
TGFB3Transforming growth factor beta; Belongs to the TGF-beta family. (409 aa)
LOC102349421Cytochrome P450, family 1, subfamily C, polypeptide 2; Belongs to the cytochrome P450 family. (528 aa)
ABHD2Abhydrolase domain containing 2. (431 aa)
LOC102352268Transforming growth factor beta; Belongs to the TGF-beta family. (414 aa)
TGFB2Transforming growth factor beta; Belongs to the TGF-beta family. (415 aa)
LOC102354684Immunoresponsive gene 1, like. (506 aa)
TGFB1Transforming growth factor beta; Belongs to the TGF-beta family. (401 aa)
CAV3Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (153 aa)
FOSL1FOS like 1, AP-1 transcription factor subunit. (268 aa)
UBE3AUbiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. (907 aa)
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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